Query= MSMg01no215_e05.b1 MSMg01no215_e05.b1 CHROMAT_FILE:
MSMg01no215_e05.b1 PHD_FILE: MSMg01no215_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:52 2005
(290 letters)
>mm_chr4_98864903_98865591
Length = 689
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 5 gaattccttaagatagagatcagtgtaagatcaggcttctaggcgtacacatttattgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaagatagagatcagtgtaagatcaggcttctaggcgtacacatttattgtt 264
Query: 65 agtatttttattcgtggtgcagtgatattataggttctttttttagttaaattttttctt 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtatttttatt-gtggtgcagtgatattataggttctttttttagttaaattttttctt 323
Query: 125 gtgtgtcattgcttgtggggtgtgtgtgtgtctgtgtatgtaagagcttatctcattatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgtgtcattgcttgtggggtgtgtgtgtgtctgtgtatgtaagagcttatctcattatc 383
Query: 185 tcactatatagccaggcctggaacttattgtgtaaaccagaatggcctcaagcccttaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcactatatagccaggcctggaacttattgtgtaaaccagaatggcctcaagcccttaga 443
Query: 245 gatccgcctgcctctgcctcctgagtttattgtatttgaataatgg 290
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 gatccgcctgcctctgcctcctgagtttagtgtatttgaataatgg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no215_e05.g1 MSMg01no215_e05.g1 CHROMAT_FILE:
MSMg01no215_e05.g1 PHD_FILE: MSMg01no215_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:52 2005
(282 letters)
>mm_chr4_99004200_99004878
Length = 679
Score = 491 bits (254), Expect = e-143
Identities = 274/282 (97%), Gaps = 3/282 (1%)
Strand = Plus / Minus
Query: 1 ctgcacacacatgcctgcacacttactgaagtgaaactgtaaatctccctctgaactcct 60
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 479 ctgcacacacatgcttgcacacttactgaagtgaaactgtaaatctgcctctgaactcct 420
Query: 61 aagacaaacgcagccagggaaatacaatcgattcattcgttcgtataccaaatattttac 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acgacaaacgcagccagggaaatacaatcgattcattcgttcgtataccaaatattttac 360
Query: 121 ttcacaccttagacaaaagatgttgaattttgactacagagcatgagattttaaaaacat 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 359 ttcacaccttagacaaaagatgttgaattatgactacagagcatgagattttaaaaacat 300
Query: 181 aacaaacaaaaaatggacccccccctctctgttttcccatatgacaagctttaatagtta 240
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 299 aacaaacaaaaaatggtccccccc---tctgttttcccatatgacaagctttaatagtta 243
Query: 241 gagatgtagttacaaattatgacaattctagaaaggaataat 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gagatgtagttacaaattatgacaattctagaaaggaataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 679
Length adjustment: 9
Effective length of query: 273
Effective length of database: 670
Effective search space: 182910
Effective search space used: 182910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
