XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTTCCATAGATCTCTTTTGCTTCAAATGTACAAAATATGTGGGAAACAT
CTATTTCAAAAGCACTTGTTTCTGCTAGTTCCTGATATCATCATTTTCTT
CAACTTTGCTCATTAGTTCAGTCTACCAGGAAACCTCAAAACTAATACCA
TAGATACCTGTCTCTTTGAGGAGAATTGATTCTCACTAAATTGTTGCTGA
GTATGGCGGGGGGTGTGGGGGGCGGTGTGCGTGTCAGTGGCTAACTGTGC
ACAGTAAGGACAGCAGAGCAGAGGACTCCCCTTCTAAGCTGTGCTTATTC
TCTGAAACTGGTTTTTCCTTCCCCACCACAAGAGAGTGTCTCTCATAAAA
ACATTAAATGCACAGGCTCGCAACGCTCATAAGTTTATAGATGGAGAGTT
CGTAGAATAGAAAAGTATGCTGAGTTCAAAATATCTAGCCTAGAACTAAG
ATTGTATGAGATTTTTAAATCATAACAACTAAATGCACTATTGTGCACTA
TTGTTTCCTGGACACTTGTGTGTGTTGCTGCTCACTGAGTGCCTTAACTT
TGTCTTTCCTTCTGTTGAATCTGGTACCAGCAGTCTTTATCCTCCTTTAG
CTGATAAGGAAAATGAGGCCCTGTGGCATACTCCGTGTGCATGATCTCTT
CGCTCAAAGCTGG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAGCAGGGTATAGGGACGATTCCAG
ACTCATGGATGTCTTGAGGCAGCCCGGAAGCTGAAGTTTCCTGTGCTGTG
TGCTTTGACTGGGGTTAGGCAGATGCTCAGACATCACCACCAGGACATTT
GTGGCAATGCAGTGGAAGACCTGGCCCCGGCTGCAACACTCCCTGATAAT
AAGTCTTTCCTGGGTCACCCTTTCAAAGGCAAAGCCCAGCAGGCATAGCT
AATGGTCTAGCCAGAGGTTGCATCTGGACTTGAGAAGCCAAGCAAAGGTG
CCAACTTCCTTCTGATTTTCTACCTCTNGCCCCCCCCAGGTGGGAGGGTT
GAGTGCAGGTGGTGTTTGTGGCCCCCCAAAAAATAATAAAGTTGCGTGGG
GGGGCTTTACTCTTCATTCCCCCTTCCTCCTTCCTTTTTCTCCTTTTCCC
TCTTTTTTGTCCATTTCCCTCCATTCCTCCCTTTCATCTTTTCCTTCCTT
CCTCCTCCTTTTCCCCCCTCTCCCTACTCCCTTCCCTCATTTCCTTGATT
CTCCTCCCTTTTGCTTCCATTTACCCTTCTCTACCCCTTTCTTTCAATCA
TTCTTCTACCTCTTCCTTTTGCCCTCTTCCTATTTCCTTCTCCCCCTCTT
TCTCTCCTTTCTCCCCTTATATTCTTTCCCTCCTCCCTTTTCTTTCCTTT
TCCTCCCN

Query= MSMg01no215_l04.b1 MSMg01no215_l04.b1 CHROMAT_FILE:
MSMg01no215_l04.b1 PHD_FILE: MSMg01no215_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:26 2005
         (317 letters)



>mm_chr4_106056630_106057346
          Length = 717

 Score =  485 bits (251), Expect = e-141
 Identities = 290/313 (92%), Gaps = 18/313 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttccatagatctcttttgcttcaaatgtacaaaatatgtgggaaacatctatt 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcccatagatctcttttgcttcaaatgtacaaaatatgtgggaaacatctatt 264

                                                                       
Query: 65  tcaaaagcacttgtttctgctagttcctgatatcatcattttcttcaactttgctcatta 124
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaaagcacttgtttttgctagttcctgatatcatcattttcttcaactttgctcatta 324

                                                                       
Query: 125 gttcagtctaccaggaaacctcaaaactaataccatagatacctgtctctttgaggagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcagtctaccaggaaacctcaaaactaataccatagatacctgtctctttgaggagaa 384

                                                                       
Query: 185 ttgattctcactaaattgttgctgagtatggcggggggtgtggggggcggtgtgcgtgtc 244
           ||||||||||||||||||||||||||||   ||||||             ||||| ||||
Sbjct: 385 ttgattctcactaaattgttgctgagta---cggggg-------------tgtgcatgtc 428

                                                                       
Query: 245 agtggctaactgtgcacagtaaggacagcagagcagaggactccccttctaagctgtgct 304
           ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agtggctaactg--cacaggaaggacagcagagcagaggactccccttctaagctgtgct 486

                        
Query: 305 tattctctgaaac 317
           |||||||||||||
Sbjct: 487 tattctctgaaac 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no215_l04.g1 MSMg01no215_l04.g1 CHROMAT_FILE:
MSMg01no215_l04.g1 PHD_FILE: MSMg01no215_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:26 2005
         (290 letters)



>mm_chr4_106206256_106206945
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagcagggtatagggacgattccagactcatggatgtcttgaggcagcccggaagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 490 actagcagggtatagggacgattccagactcatggatgtcttgaggcagccaggaagctg 431

                                                                       
Query: 61  aagtttcctgtgctgtgtgctttgactggggttaggcagatgctcagacatcaccaccag 120
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 430 aagtttcctgtgctgtgtgctttgactggggctaggcagatcctcagacatcaccaccag 371

                                                                       
Query: 121 gacatttgtggcaatgcagtggaagacctggccccggctgcaacactccctgataataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gacatttgtggcaatgcagtggaagacctggccccggctgcaacactccctgataataag 311

                                                                       
Query: 181 tctttcctgggtcaccctttcaaaggcaaagcccagcaggcatagctaatggtctagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 310 tctttcctgggtcaccctttcaaaggcaaagcccagcaggcatagctaatggtctagcct 251

                                                             
Query: 241 gaggttgcatctggacttgagaagccaagcaaaggtgccaacttccttct 290
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caggttgcatctggacttgagaagccaagcaaaggtgccaacttccttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)