BAC Information

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BAC

Clone NameMSMg01-215M07
Chromosome4 (Build37)
Map Location 87,110,775 - 87,111,008
singlet/doubletsinglet
Overlap genenone
Upstream gene4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215M07.T7 (MSMg01no215_m07.b1)MSMg01-215M07.TJ (MSMg01no215_m07.g1)
ACCAG395898AG395899
length707719
length of high quality
(start - end)
308 (43 - 350)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no215_m07.b1 PHD_FILE: MSMg01no215_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:31 2005CHROMAT_FILE: MSMg01no215_m07.g1 PHD_FILE: MSMg01no215_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATC
AATTTGCATTCTTCTATATGATAACAGCCAGTTGTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAG
ATCAAGTGACCATAGCTGTGTGGGTTCATTTCTGAGTCTTCAATTCTATT
CCATTGGTCTACTTGTCTGTAGCTAAACCAGTACCATGCCGTTTTTATCA
CAATTGCTCTGTAGTACAGATTTAGGTTAGGCATGGTGATTGCACCAGAG
TTTCTTTTATCATCCCCCCCCCCCCTTGCTATCCTAGGTTTTATGTTATT
CCAGATGAACCCCCACACAGCTCTTTCTAATTCGCTGAAGAATTGAGTTG
GAATTTTGATGGGGATTGCATTCAATCTGTAGATTGCTTTTGGCAAGATT
TTTATATATTGATCCTGCCAATCCATGAGCATGGCAGATCTTTCCATCTT
CTGAGATCTTTAATTTCTTTCATCCGAGACTTACAGCTCTTATCATATAG
ATCTTTCACTTCCTTAGTTAAAGTCACACCAAGGTACTTTATATTATTTG
TGACTATTGTGAAAGATGTCGCTTCCCCAAGTTCTTTCTCACCTTGATTA
TTTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGTTCCTCCTATAGGCTTTTC
TGGTCCATCTGGCAGTTGGACCCTACAACATAAAGAAGTACTTAGGGGAG
GACACTGCCCAACCTTAGGCTACAATGGAAGTACCAAGCATTTGTCATGG
ACACTTAAAATTGGTTTTGTCAACAGAAATGCAAATTAAGCCCATCTTTG
TCTTGAAGCCATATGTCTCTGGGATAGAAATATTTTTTTCATGCGGAGAA
TGGTGCTTAGGATTGGCTTGCTTACAGCTCAAAGCATGCTCTGTGGTGGT
CTGGGGAGCTTTCTGAGACAACGCCGAGACATATAGAGAGTGGACATCTT
TAGAGAGCAGAGGAGCCACCAAGCTGAGAAGCAGCCTTTTGCCTGCAATG
ATAAGAAGGAAGGATACATCGCAGGGAGGATGAGTGCTTCTTCAAAGCCC
TTCCTGCCTGTGGTCCTTCCAGAGAAGCCTCCCTTCCTACTTGGCTTTGC
TTATGGCCTTTCAATTTTATTGTTATTGTTATTATTATTTATTGCTGCTA
TCATTTATTATGGCCATTATTAATATTTTGTATGTGTGTTTGCCCATTAT
TTTTACGTCTCCACCTCTATATTTCCCCCTAACCCCCTCCATTTTTTATC
CCTCTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_m07.g1 MSMg01no215_m07.g1 CHROMAT_FILE:
MSMg01no215_m07.g1 PHD_FILE: MSMg01no215_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:31 2005
         (234 letters)



>mm_chr4_87110575_87111208
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacataaagaagtacttaggggaggacactgcccaaccttaggctacaatggaagtacc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 caacataaagaagtacttaggggaggacactgcccaaccttagggtacaatggaagtacc 260

                                                                       
Query: 61  aagcatttgtcatggacacttaaaattggttttgtcaacagaaatgcaaattaagcccat 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 aagcatttgtcatggacacttaaaattggttttgtcaacaaaaatgcaaattaagcccat 320

                                                                       
Query: 121 ctttgtcttgaagccatatgtctctgggatagaaatatttttttcatgcggagaatggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgtcttgaagccatatgtctctgggatagaaatatttttttcatgcggagaatggtg 380

                                                                 
Query: 181 cttaggattggcttgcttacagctcaaagcatgctctgtggtggtctggggagc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaggattggcttgcttacagctcaaagcatgctctgtggtggtctggggagc 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)