BAC Information

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BAC

Clone NameMSMg01-217L14
Chromosome4 (Build37)
Map Location 16,644,091 - 16,644,384
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217L14.T7 (MSMg01no217_l14.b1)MSMg01-217L14.TJ (MSMg01no217_l14.g1)
ACCAG397151AG397152
length687759
length of high quality
(start - end)
313 (51 - 363)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no217_l14.b1 PHD_FILE: MSMg01no217_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:27 2005CHROMAT_FILE: MSMg01no217_l14.g1 PHD_FILE: MSMg01no217_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGAGAGACATACCAAAGGATACAGCAATCCATGTGTAC
TTGACCGTACACAAAGAATTACAGGCCCCTAAGGAATCCAGGGAATGAAA
AACATGGCCTTACCCAGAGAAAAGCACACCAATTGTTTACCTAATACCAA
ATGATCTGTTCTAAAATATACCTATAACATTATATAGACTGAATAGGTTA
CATTTAGAAATATTTATGTATTATACATATTCATATATGCAAATAACAGC
AATTAATAAAGCAAGAATCCATGGATTTAAAAGAGAGCAATAATAATTAT
GTATGAGGTTGTTTANGTGATTACCACCGAACGANACCCGTGATTGTATT
ATAATCTAAATTTTTAAGATGGAAAACCGAGAAGATATGTAAGACATACG
ATAGTTTTCTGTTTTTGTTATTTTTCCTAGAAGTCATTTTCTAGCTATAA
TTGTTTGTTAAAAAGAGATCACTATAAATTACATCATAAAGGAAACTAGC
AACAATGAGCACATTGTTTTTATGTCCAAGATGGAAAACAGATTCATTCT
ATGAAATTTATGGAAATGCCCATGAAACATGAAGTATTGAAAAATATATA
TTATGCTTATCTCTGAAGTCTTCTCTTATTTCACCAT
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGACATTCTGGAACACAGGCTATTT
TTGTGTTGCTTATGAAGTTTGGACCTTGGTTCTGACTGATCAACAGTGAA
ACATGTGGAAGATTCCAATCTGTTTGTTGTGTATATACAGAGTTTAGACA
ATGGTAGTTTATATAGAGATTTGAACTTTTTTATATCCTTATAAGTGACT
CCTTATAAGTGACACAATTACTGGGGAAGGAAAGAAGATAAGTAAGAAAC
ACTTCAATTGACATATATTTATCCAATGAAAAAGAAAAGATTTTTTTGTT
TTGTGTTTTGTTTTGTTTTTTTTTCCNNTCCACCCCGAATGAAGCAAAAC
TAAGTTATCCTGTCAGGAACGATTCGATGCTCACTGTAAGTCGTTTTCCT
CCTCACTCTCCCTTCTACCTCTCTCTTTCTCTACATCCATTTCCTACTAC
AACACATGTTTTTATCCCTTTAGCCCCCTATGGAAAAAAAAAGTCCTCAC
ACAGTGAGTGCTGATCCACATTTAATAAGCAATACAAATGCATTCTGAGA
TACCTTCATTTTTAATGTAAACTTTCAAGCAGTTGGTCATTGTCAGATGG
CATCAGACACAGTGTTTAATGAGTGCATCGCATAGAAAAAACTGGTCTTG
TCAGCCTTCTAAGACACCATGAGGAAGGAAGTAATCATTTTCTGGATACT
GTATTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_l14.g1 MSMg01no217_l14.g1 CHROMAT_FILE:
MSMg01no217_l14.g1 PHD_FILE: MSMg01no217_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:27 2005
         (294 letters)



>mm_chr4_16643891_16644584
          Length = 694

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgacattctggaacacaggctatttttgtgttgcttatgaagtttggaccttggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 attgacattctggaacacaggctatttttgtgttgcttatgaagtttggaaattggttct 260

                                                                       
Query: 61  gactgatcaacagtgaaacatgtggaagattccaatctgtttgttgtgtatatacagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgatcaacagtgaaacatgtggaagattccaatctgtttgttgtgtatatacagagt 320

                                                                       
Query: 121 ttagacaatggtagtttatatagagatttgaacttttttatatccttataagtgactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagacaatggtagtttatatagagatttgaacttttttatatccttataagtgactcct 380

                                                                       
Query: 181 tataagtgacacaattactggggaaggaaagaagataagtaagaaacacttcaattgaca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tataagtgacacaattactggggaagcaaagaagataagtaagaaacacttcaattgaca 440

                                                                 
Query: 241 tatatttatccaatgaaaaagaaaagatttttttgttttgtgttttgttttgtt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatttatccaatgaaaaagaaaagatttttttgttttgtgttttgttttgtt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)