BAC Information

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BAC

Clone NameMSMg01-217P08
Chromosome4 (Build37)
Map Location 71,336,497 - 71,336,781
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217P08.T7 (MSMg01no217_p08.b1)MSMg01-217P08.TJ (MSMg01no217_p08.g1)
ACCAG397301AG397302
length738747
length of high quality
(start - end)
194 (127 - 320)289 (83 - 371)
definitionCHROMAT_FILE: MSMg01no217_p08.b1 PHD_FILE: MSMg01no217_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:50 2005CHROMAT_FILE: MSMg01no217_p08.g1 PHD_FILE: MSMg01no217_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCGACTCCGCGGAA
TTCCAGNTTTATTTCAGATAAAGAATTCCTTACAGAATGAAATAAAATTT
TTACTAGAATAGGATGTTCCACTCACCTGTCTTAATAAGTTTGGGCAATC
CCATGACATTAAAGGCTTGTAGGCAATGATCAATCACATTTTTAGAAGCC
TCTCCTGTATGCAGACAAGCAAAAAGAAATCCTGAACAAGTATCAATACT
TTTATATATATATTAATTCTCCAAATTCTGCATAATGGGTTATATCCATT
TGCCAAATATGATTAGTTTTTTTATTTCTAGGACTGACTCCTAAACGAGG
CGCNGGATTTTTTTTTTTTTCCCCCCCGCCCCCCCCCGANAATCATNCNN
GCNTGCTCCTTAGTGATCTTACCAAAAAACATAAAAAAAAGGTTGGGGGG
GGGTACTCTTTTCATGACCATGTTCCCTCTATATTATTTTCACCTATCCT
CTTTCTTTTTCCCTCTCCCGTCCCGTAATCGTCTATTAATGTCCTCCTCT
CTTTCTTTTTTCATTTCAATTCTCCTCTCCTTCCCCCTCCCCTCTTATTA
TTCCCCTTTTTTTACCCTTACCCTTTACCTTCTTTTTTTTCCCCTCCTAA
ATCTTCCTCTTCTCTCTTTTCTTCCTTTCCCCCCTTCCCCTCTATCTCTA
TTTTTATACCCGCCCCCCTCTTCTCTCTTTTCCTTTTT
NAAATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAACTTATATGCAGT
TAGAGCAACTATTTAATCTTTCCTTATACGCTTGATTTTCTAATAGGGAA
ATATTAACCCGATCAAAGACAGAATATAGTTTTATGCTTACATTTTTAGT
TAATAAAAAAAGGCAGTGGTTTGTTTTAGAGTCCTCCAAACTCTTTACAG
AACTTTCCATTCTTTCACTAACGTTGTCTTGATAATTTCTTACCAAGGGA
AGAAAAGTAGTCAATTTCTGCTTCTTCTGGTTCCTGCAGTTCTCCAGGCC
ACACTTTCTTTCACCTTGTCTATTTCTCTGACCGGACAAGTTTGGGCACC
TGATCCAGACTTAAGTATATTCATCCCCAGCTCTACATCTAGGGCTGTCT
CTAATGGTTACACTCCCTCGCTTCTCTTAGAAATTGTCTGTCCACTCTCC
CAGAGAATCATGGGATCTGCATTTTTCCAGATGAACAATGCTAATCTTGG
CCTTCCTATCTTGTTCTTGGAAAAGCCTGAAGCTAGCTATTCCTCCGTTT
TATTCGAATGCCCTTTTGATGACTGTGCTTCTTATACTTTTTTGTTATGT
GCTTTTTGATACGTTACTTTTCCCCTTTTTTTCTTCATCTTTTCATTTTT
TTTCTCGTGCTCCTTTCATTTGTATATTCTTCTGTTTATTTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_p08.g1 MSMg01no217_p08.g1 CHROMAT_FILE:
MSMg01no217_p08.g1 PHD_FILE: MSMg01no217_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:50 2005
         (289 letters)



>mm_chr4_71336306_71336994
          Length = 689

 Score =  509 bits (263), Expect = e-148
 Identities = 281/289 (97%), Gaps = 4/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaacttatatgcagttagagcaactatttaatctttccttatacgcttgattttcta 60
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 476 actgaacttatatgcagttagagcaaccatttaatctttccttataggcttgattttcta 417

                                                                       
Query: 61  atagggaaatattaacccgatcaaagacagaatatagttttatgcttacatttttagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atagggaaatattaacccgatcaaagacagaatatagttttatgcttacatttttagtta 357

                                                                       
Query: 121 ataaaaaaaggcagtggtttgttttagagtcctccaaactctttacagaactttccattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ataaaaaaaggcagtggtttgttttagagtcctccaaactctttacagaactttccattc 297

                                                                       
Query: 181 tttcactaacgttgtcttgataatttcttaccaagggaagaaaagtagtcaatttctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 296 tttcactaacgttgtcttgataatttcttaccaagggaagaaaagtagtcaatctctgct 237

                                                            
Query: 241 tcttctggttcctgcagttctccaggccacactttctttcaccttgtct 289
           | |||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 236 tgttctggttcctgcagttctccaggccaca----ctttcaccttgtct 192


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)