BAC Information

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BAC

Clone NameMSMg01-217P17
Chromosome4 (Build37)
Map Location 76,721,876 - 76,722,197
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217P17.T7 (MSMg01no217_p17.b1)MSMg01-217P17.TJ (MSMg01no217_p17.g1)
ACCAG397317AG397318
length737751
length of high quality
(start - end)
326 (38 - 363)45 (194 - 238)
definitionCHROMAT_FILE: MSMg01no217_p17.b1 PHD_FILE: MSMg01no217_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:51 2005CHROMAT_FILE: MSMg01no217_p17.g1 PHD_FILE: MSMg01no217_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
CTTCCCAAGTGCTGGAATTAAAGGCATATGCCACCACTGCCCAGCTTCTA
TTCGTTTAACACTATTATTATCATCATCATTATTATTATTATAGAAAATT
CATCAATAATCTTTAGAGAATGAAGATCACAAAGATCACTGGCAAGGGCA
CTAAAAATTCAGAATTCAGTCTTAGGTTCAGTTCTGTTCTTAACCCACTT
TGTAGTAGTCAACAGAAGAGGGTGCTGCTGAATCATGGAAGCGGAGTCTA
ACTCTTGATCACAGCCTGCTGTGATGGAATCTGCCTGAACCACTACTTGT
GGTAGATGATTANTTTCCTTCACCNAGNTCCAGNCCCCACTACATTCCTC
AAGCCCAAAATATTAATAACACACAATAAAAAAAAAAAAAATTATGACGA
TCATAATTTAATGTCATTAGCAACAAAAATAGCTGTGATCAATATTTGCA
TAACCTTAAAATATTTCATTGAGAAACTAAAACACTGAATGAGAGAAAGG
TAGAAGTATACAGCATTTACAGACAAATGTAAAGGTCATAACAAATAAGC
CCAGAATAAACTATGGCCTTTTGGTGACAATGTGGTTCATTAATGTTATC
AAACGCATTTGGGTATAGGATGTAGCTATGTTACACACCCATGTTATACT
TTTTGATTCCCCGTAACTTTTCTTTTCCTTATAGTCA
AGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCGTCCTTCTTGGAAAATACTTTCGGCATTATCGCTGGATGTG
GACATGTTTCCCTCCACAACATTTGCAGGATGTGTGAAGAACATGCTGTC
AGTTGGATAGAGACCAAGTGAATGTGGATAGCGCATCCAAAACTTCACAG
CCCAATCCATTTACCTTTTGAAGTATTTCATATTCAACATGTGGCCATGC
CTTATCATGGAGATGAGTTACGCCCTTTCCATTGATCACTGCCTGCTTTA
GGCATTGCCATTTTTAACGTAGCTCATCACTAATCTCTCACATATAACCG
CGGTGACTACATTACCTCTCTGCTCCTGTCCACCAGACCTTTTAATTGTT
GTCTTGACAATTCTTGGTACCAGTGGACCTCTGCAAAGTGTTTTGTATGT
TCTACTTTGTCCATCCAAGTCAGCCCCCACTTGTCACTATACAATCCTCT
TGTCACTTCTCATTGTTTACCTGATCAGCACAGCTTTCTTTATTGCTGTG
TATAACTCCGACCACCTATTATCTTCTTTTATTATATTCTGATCCCCTCG
CTTTTTTTCTCTTTTCCTAGCCCCCCTCTCTCTTTTTTTTTTTTCCCCTT
TCACAACTTCGTTTCCAGTTGTCCCATTTAGACCCTGTAGTTTTTAACAC
TCACTTGGAAACCTTCTCCTGTGCCTCCTCTCTATCCCCCTTCCTTTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_p17.b1 MSMg01no217_p17.b1 CHROMAT_FILE:
MSMg01no217_p17.b1 PHD_FILE: MSMg01no217_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:51 2005
         (326 letters)



>mm_chr4_76721676_76722401
          Length = 726

 Score =  561 bits (290), Expect = e-164
 Identities = 313/322 (97%), Gaps = 3/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactcttcccaagtgctggaattaaaggcatatgccaccactgcccagcttcta 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ggaattcactcttcccaagtgctggaattaaaggcatatgctaccactgcccagcttcta 260

                                                                       
Query: 64  ttcgtttaacac---tattattatcatcatcattattattattatagaaaattcatcaat 120
           ||| ||||||||   |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttcttttaacactattattattatcatcatcatcattattattatagaaaattcatcaat 320

                                                                       
Query: 121 aatctttagagaatgaagatcacaaagatcactggcaagggcactaaaaattcagaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctttagagaatgaagatcacaaagatcactggcaagggcactaaaaattcagaattc 380

                                                                       
Query: 181 agtcttaggttcagttctgttcttaacccactttgtagtagtcaacagaagagggtgctg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcttaggttcagttctggtcttaacccactttgtagtagtcaacagaagagggtgctg 440

                                                                       
Query: 241 ctgaatcatggaagcggagtctaactcttgatcacagcctgctgtgatggaatctgcctg 300
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaatcatggaagcagagtcgaactcttgatcacagcctgctgtgatggaatctgcctg 500

                                 
Query: 301 aaccactacttgtggtagatga 322
           ||||||||||||||||||||||
Sbjct: 501 aaccactacttgtggtagatga 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)