BAC Information

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BAC

Clone NameMSMg01-217P24
Chromosome4 (Build37)
Map Location 63,639,306 - 63,639,623
singlet/doubletsinglet
Overlap geneTnc
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217P24.T7 (MSMg01no217_p24.b1)MSMg01-217P24.TJ (MSMg01no217_p24.g1)
ACCAG397330AG397331
length721753
length of high quality
(start - end)
323 (42 - 364)100 (129 - 228)
definitionCHROMAT_FILE: MSMg01no217_p24.b1 PHD_FILE: MSMg01no217_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:53 2005CHROMAT_FILE: MSMg01no217_p24.g1 PHD_FILE: MSMg01no217_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGAGCAGTGGGCATGATATTTTTCTACTAAAGAGCTTCCTAGGTGTT
TGTTACTTCAGTGTGTAGCTTTCTGCTATGGGGTCCTCAAGTCCTGAGCC
CTACAACAGATAGCTAAGCACAAAACACCAGAGTCATACCTATTAAAAAG
CTGGAGAGGGGCTGGAGATATGGCATAACACTAAAAGCCTAACTGCACAA
ATATGAAGGTCTGAGTTTAGATGTCCAGTATCCGCATACAAGCTGGTTAG
ACACAATGACCTGTCTGTAACTCATGTTCTCAGGAAGCTGAGGAAAGAGA
TCTCTTCCCCTTTCTGTTCATCCCGTACTAGACCCACTGAATTGGCAAGC
TCTGGGTTTTAGTGTGACACCCTGCCTCAATATATAAGATAANATATGAT
AGAGTAAGACATACAGCCTCTATAAGCACAAACACACATGCACCTGCATC
TTTCAGACATCTTTCACACATGTACCACAGGTGTGAACACACACACACAC
ACACTCTTTCCATATATATCCACATACACTCACACTCACACTTTTATATG
CCATAGTTAGAGATACCTATGCCACAATGCTTTCTTTCCAATTATACCCC
TTACCACTTCAATAGAACTTTCCGTAACCAATTGCCTGGTTTTTGAAAAA
ACCCTTAAAGGTGTTGTTTCN
CTTCGATGATGTGGGAGGCCTGGCGGCCGCCTGGTTCAAAAAATTAGGTG
AACTATAGAAGTTTTCAAGAAATTCCCTCCTGTTAATAACAATTAGAGAG
CTGTTGGCAATCTTCAAAATTTACACCAGTATTAGGCTTATTAGGCTGGC
CCTTGTGATAGTTGATTATACATCTGGGTATAACTATTTGTTACATTTTT
GCCTTTGTTGTTTACAAGNAACTTTGANAAGAATAAGAGNAAGTCCTTGG
GGAAGAGGCATCTAGGTTAAATCCAGCTTGANTTCNCTAAANCTGGTGGN
CAGAGTATGGTATGTCTTCAGTTCCTGTTTCTTGCTTTCAAGNNCTGGGA
GGNNANANAAGGTTTTTGTTATACCCTACCCCATAGCNCATANTGGNNAG
GNCGANCNCTTATAAACCCCCGATTAACGACTAAATGGGAGATTTATTAT
AGAAAGGCTATGCCTATTGTTAGGTCTGCTTTTTCTCTCCCTTTGATCGT
GTTTGTGTCCGTTAGTGTTTACTCTCTTGCTTCATTTCTTCCTTTTCTCT
CCTCTTTTCTTATTTTCCTTCTCCTTCTTTCCCTCTCCCTTTTTCCTTTT
TTTCTTTCCCTATTTCTTTATCTTTTCTCTCCCTTCTTATCCTCTATATT
TATTTTCCCCCTTTTCTTCCTCACCCTCTCCTCTTTTTTTTATTCTCTTC
TATTATTTTTTCCTTCACCTTCTCCTATACAACTCCCTCTTACTATCCTT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_p24.b1 MSMg01no217_p24.b1 CHROMAT_FILE:
MSMg01no217_p24.b1 PHD_FILE: MSMg01no217_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:53 2005
         (323 letters)



>mm_chr4_63639103_63639825
          Length = 723

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggagcagtgggcatgatatttttctactaaagagcttcctaggtgtttgtt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggagcagtgggcatgatatttttctactaaagagcttcctaggtgtttgtt 263

                                                                       
Query: 64  acttcagtgtgtagctttctgctatggggtcctcaagtcctgagccctacaacagatagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acttcagtgtgtagctttctgctatggggtcctcaagtcctgagccctacaacagatagc 323

                                                                       
Query: 124 taagcacaaaacaccagagtcatacctattaaaaagctggagaggggctggagatatggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagcacaaaacaccagagtcatacctattaaaaagctggagaggggctggagatatggc 383

                                                                       
Query: 184 ataacactaaaagcctaactgcacaaatatgaaggtctgagtttagatgtccagtatccg 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 ataacactaaaagactaactgcacaaatatgaaggtctgagtttagatgtccagtatcca 443

                                                                       
Query: 244 catacaagctggttagacacaatgacctgtctgtaactcatgttctcaggaagctgagga 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 catacaagctggttagacacaatgacctgtctgtaactcaagttctcaggaagctgagga 503

                             
Query: 304 aagagatctcttcccctt 321
           ||||||||||||||||||
Sbjct: 504 aagagatctcttcccctt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)