BAC Information

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BAC

Clone NameMSMg01-218A24
Chromosome4 (Build37)
Map Location 74,108,461 - 74,108,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258
Downstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218A24.T7 (MSMg01no218_a24.b1)MSMg01-218A24.TJ (MSMg01no218_a24.g1)
ACCAG397373AG397374
length758712
length of high quality
(start - end)
249 (46 - 294)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no218_a24.b1 PHD_FILE: MSMg01no218_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:58 2005CHROMAT_FILE: MSMg01no218_a24.g1 PHD_FILE: MSMg01no218_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATCTGTCCATCAACCTCTGCAGCCCCAGATTCCTTTCAGGAGG
TTTTCTTTCACAACCGGACATAGCTTCTTTTGAGGAATTTTTGTTCATAA
CAATGCATATGAAAACAACCAAAACATTAAAACAGTTATCACACGCATGA
TTCAATTACATAAATTTAGGTGCACTCAGTTTAGGAAAGCAGAAGAAAGT
TTCTCTGTTTGGAAGGCTTAATAACACAAAAGATCAAACAGNAAAATCTG
TTCTTTAGACTTAANCTCTCCCTCTCTCTCTCTCTCGCTCTCTCTCTCTC
TCTCTCTCTCTTTCTGTCTGTCTCTCCCCCCCCCTCTCTCCTGTGTGTGT
GNTACCACTTTGATGAATTCGCCATTTGTTCTCATTTTGTTAGACTGTAC
TGTCTATGTGTTGAGNNNNTGGCCTGGTTGGTTCTTCACTCCATNTACTC
GCTGTTCTACGTCTGATGCTTTTTCTCAATACTTCTAACGCTTGAGCACT
GCTTTTTAACTATCCTGTCACATGACTGATATTTCTTCTAGAGTCTTTCT
CCACCTTACTTCTCTCCTGCTTTACCCCTCCTCTTCCTTTGTTCATAGCT
TATTTTATCTGTCATTATTTTATTTTTCTCCTTTGTTCATTAATTACTTC
TTATACCTTAATCTCCCTCCCTACCCAATTTTTTATTCTTATCTGTTACC
GCTTCTCT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
AAGAAGCACCTGAAAATATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGTAGATGCTGGCATGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATC
CAGCAATACCTCTCCTGTCTTATCTNNAGCANACCCCCAACTGATAAGAA
GGACACATGCTCCACTATGTTCATACCAGACATATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATACTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCT
AAACACATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_a24.b1 MSMg01no218_a24.b1 CHROMAT_FILE:
MSMg01no218_a24.b1 PHD_FILE: MSMg01no218_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:58 2005
         (249 letters)



>mm_chr4_74108258_74108906
          Length = 649

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaatctgtccatcaacctctgcagccccagattcctttcaggaggttttcttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattccaatctgtccatcaacctctgcagccccagattcctttcaggaggtcttcttt 263

                                                                       
Query: 64  cacaaccggacatagcttcttttgaggaatttttgttcataacaatgcatatgaaaacaa 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacaaccggacatagcttcttatgaggaatttttgttcataacaatgcatatgaaaacaa 323

                                                                       
Query: 124 ccaaaacattaaaacagttatcacacgcatgattcaattacataaatttaggtgcactca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaaaacattaaaacagttatcacacgcatgattcaattacataaatttaggtgcactca 383

                                                                       
Query: 184 gtttaggaaagcagaagaaagtttctctgtttggaaggcttaataacacaaaagatcaaa 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtttaggaaagcagtagaaagtttctctgtttggaaggcttaataacacaaaagatcaaa 443

              
Query: 244 cag 246
           |||
Sbjct: 444 cag 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)