BAC Information

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BAC

Clone NameMSMg01-218F12
Chromosome4 (Build37)
Map Location 82,866,288 - 82,932,193
singlet/doubletdoublet
Overlap gene1810054D07Rik
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985
Downstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F12.T7 (MSMg01no218_f12.b1)MSMg01-218F12.TJ (MSMg01no218_f12.g1)
ACCAG397548AG397549
length752735
length of high quality
(start - end)
246 (73 - 318)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no218_f12.b1 PHD_FILE: MSMg01no218_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:20 2005CHROMAT_FILE: MSMg01no218_f12.g1 PHD_FILE: MSMg01no218_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,931,951 - 82,932,193)(82,866,288 - 82,866,570)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGAAT
TCATCATGTATTCCAGAAAGGATGTAAAATCCTGATTCTTCTGCCCCCAC
CTCCCCAGTTAGGGATTACACCCATGTGACACCACATCCAGATACTACTT
TTATTATCAGAAACAATAATGGGTCCTATAAGAAGACAGTTTCAGCTCTG
TTGTGAGCTGAGCCCTTGCTAGATAGCACTAAGTTTTACCTTCAGAATCT
TGCTTAGTTAGGCTCTCTGGAGTAGAGTTCTTTAAAGATGATGTTTTTGG
TTTTGGATTAGCCAAATCTTTTTCTTGAGCTGGGCTTGATAAGGTGTATC
TATATTATTCTTTATTTTCCCCCCCCCCCCCCCCCAAGGATCCTGAGTTC
AGGATAGCCTGGGCTACCCCCCCTCAAAAAAAAGACAACAATCATAACTC
AGAGATAGTGCTCGCTTCCGCAGTACATATACTAACATTGTAACGATACC
GAAAAGATTAGCATGGCCCCCTTGTCACGGATGACACCCTTATTTGTGTT
GTGTTCCTTATTTCTCACTAAACGCTAGCGGTTGAAAATTGTTAGTAATC
TCGTTTCTTCCTCATTTTATATTTTATTATTTCCCTTTTATATTCTCCGC
ACACTTTTACATTGGTTATTTTTTAATTCTCCTCTTCTCTCAAACCGAGT
TTTCCTATGCTGCTTATCTATATTATACTCTTTTCTCCTCACCTCCTTTC
TT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAAAATAATCTGGCAACTTAAATA
TATATCTAATAACACAGAGCCCTCTGTAAGGGACAAAGAAAAGGAAAACA
CTGACTTTCAAATTGATTTATTTCCACTTAAAAATACAATTTATAATATG
ACATCTGTTTTCAAAACTGTCTCAATAGTAAAAATAGAAACAGGACCTGT
CATCTTCAGGTTGAAAATTAAATCTTTATCTGCGGTCACTTAAACATCAC
AGGTGATCACATTAACATAAAATCAGCATATGAAAAGTCACGGGAACACA
ACATTTACTTTATAAATACCCCCCCCCCCCTTGTTTTTTCTAGCTGGTCT
CTTTCCTCTCTCTAGGACCAGACCATAATCCACTTATTAGCAGACAGATG
TTAATAACACATTCGATTTACAAAGAGTTCTAACCTCTTCAATTCCTAAG
GCGGTTTTCCTCTGTAAAACTGATTGCTGAAAAACGAACTAACGGAGGCC
AAACTCAAGTGCAATGAGGAGAGGAAACCGAGGCAGGGAAACAATGCCAA
GTTTGACCAGCACTGCACTGAATCCAGGTCAGAGGGGAGCTCTGAGGGTT
CAACTGGCAACTCCAAACTGGGTCACAAATAAGCGGAAAGCACATATTAT
CACAAGAGTCACTTACGCCAGAAGACAGGTTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f12.b1 MSMg01no218_f12.b1 CHROMAT_FILE:
MSMg01no218_f12.b1 PHD_FILE: MSMg01no218_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:20 2005
         (246 letters)



>mm_chr4_82931682_82932327
          Length = 646

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   aaaatcctgattcttctgcccccacctccccagttagggattacacccatgtgacaccac 63
           |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||
Sbjct: 512 aaaatcctgattcttctgcccccacctccccagttagggattacaggcatgtgataccac 453

                                                                       
Query: 64  atccagatactacttttattatcagaaacaataatgggtcctataagaagacagtttcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 452 atccagatactacttttattatcagaaacaataatgggtcctataagaagacactttcag 393

                                                                       
Query: 124 ctctgttgtgagctgagcccttgctagatagcactaagttttaccttcagaatcttgctt 183
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 392 ctctgttgtgagctgagcccttgctagatggcactaagttttagcttcagaatcttgctt 333

                                                                       
Query: 184 agttaggctctctggagtagagttctttaaagatgatgtttttggttttggattagccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agttaggctctctggagtagagttctttaaagatgatgtttttggttttggattagccaa 273

              
Query: 244 atc 246
           |||
Sbjct: 272 atc 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no218_f12.g1 MSMg01no218_f12.g1 CHROMAT_FILE:
MSMg01no218_f12.g1 PHD_FILE: MSMg01no218_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:20 2005
         (284 letters)



>mm_chr4_82866088_82866771
          Length = 684

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaaataatctggcaacttaaatatatatctaataacacagagccctctgtaagggaca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tgaaaataatctggcaacttaaatatatatctaataacacagagccttctgtaagggaca 260

                                                                       
Query: 61  aagaaaaggaaaacactgactttcaaattgatttatttccacttaaaaatacaatttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaaaggaaaacactgactttcaaattgatttatttccacttaaaaatacaatttata 320

                                                                       
Query: 121 atatgacatctgttttcaaaactgtctcaatagtaaaaatagaaacaggacctgtcatct 180
           ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct: 321 atacgacatctgttttcaaaactgtctcaatattaaaaatagaaacaggacctgccgtct 380

                                                                       
Query: 181 tcaggttgaaaattaaatctttatctgcggtcacttaaacatcacaggtgatcacattaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tcaggttgaaaattaaatctttatctgcggtcacttaaatatcacaggtgatcacattaa 440

                                                      
Query: 241 cataaaatcagcatatgaaaagtcacgggaacacaacatttac 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaaatcagcatatgaaaagtcacgggaacacaacatttac 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)