BAC Information

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BAC

Clone NameMSMg01-218F14
Chromosome4 (Build37)
Map Location 93,380,809 - 93,381,010
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F14.T7 (MSMg01no218_f14.b1)MSMg01-218F14.TJ (MSMg01no218_f14.g1)
ACCAG397551AG397552
length717862
length of high quality
(start - end)
316 (44 - 359)206 (77 - 282)
definitionCHROMAT_FILE: MSMg01no218_f14.b1 PHD_FILE: MSMg01no218_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:20 2005CHROMAT_FILE: MSMg01no218_f14.g1 PHD_FILE: MSMg01no218_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACAGAGGACTCTTGAATGGCCCGAGAAGCACCTAAAGAAAAGCT
CAACATCCTTAGTCATTAGGGAAATGCAAATCAAAACCACCCTGAGATTT
TTACCTTTCACCAGTCAGAGTGGTGAAAGATCAAAACCTCAGGTGACACC
ACACTCTGGAAACCAATCTGGTGGTTTTCAGAAAATTGGAAAATAGTTCA
AACATGAATGCTTCAGAACAAGTTTCTATTTTCTATGTCTATCTTGTGAG
AGTATATCATTGACTTTGGTTCTAGAATGAAGCTGAAAAAAGAAGCTACT
ATCAATATTTTCCTTAACTCANAATCCCTNACCTTTCTCAACAGTAATTA
TATCTTAAATTANNNCCCCCCACGAATAACAAAATTGTGATTACTTATAT
ACTTTAAAATTTTTTGTTAAACATTTACTCTTATATCACAAGAATATGTG
CAAATATTAGCCTAAATAGTTTATCAGAAGTTCATATATAGAACACAATG
TGCAATTTGTTCTTTGGAGTATAATTTTTGTGATAGTCTATTTGTCTAAT
TGTATAAGTAAGTCTCCCTAAAATCCAGATTTAAGATCCTTTAGGAATTA
TCTGAATTAAAATCGATTCTGATTTCATGTTGAATTTCAAGTTTCTATGA
TTCAAAAACCATCTCAA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGAGGAGATGTCATATTTTTTTCAC
ACACAGACTTTATAAATAAACTCATTTATTTTTTCCAAATTTTCATATAT
ACAGACACACATATAATCTTTGATCGCATTTCTTCACATTATGCCCTCTT
TTCCATTCTTGCCTGTCATGCCACTGTATCCCTACTCTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTATGTGTGTGTGTCTNNNTTTTTTTCCCAATTATT
CTATCCCAACCCCTTTTTTTTTTTTCTCCACATTCCTAAACCACCCACCC
CCCCTTTTTAATANNTTCCCCCAAACAAAACCCCCAATNAATTGATATCA
ATATTAATTTTACTCTTGTCCGCCCCCCCAAAAAAAAAAAAAAATATCCC
CCTCGCGGGCCGTGTTATCTACCTTTAAATTTTCGCCATACCATATTTCA
TTCTCTTTCCCCTCTTTTTTTTACCTTCTTTTCAACTACCTATTATTTCC
CTCCCCCCTTTTTATATACCCATTCCCCCCTCCTCTCCCCCCTTTATATT
CATATTTCTATATTTTATTACCCTCTTCTCCCATTTTCTTTACCACAACC
CACACTACCCTTCCTACTTAATTTTTCTCCATCCTACTCCACTTAATTAC
TATCCACCCCTACACTTTTCCCTCAATCTTACTCTCCACCCTACTATATC
CTAACCACATTTATTTTCATAACCTTACCTATCATTATCCTTCTAATTCT
CCTTCCCATCCCCTATTTTACCACTTTCCTCCCACTTATTACCTTTCCTT
CTATTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f14.g1 MSMg01no218_f14.g1 CHROMAT_FILE:
MSMg01no218_f14.g1 PHD_FILE: MSMg01no218_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:20 2005
         (206 letters)



>mm_chr4_93380609_93381214
          Length = 606

 Score =  368 bits (190), Expect = e-106
 Identities = 199/202 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggagatgtcatatttttttcacacacagactttataaataaactcatttattttttcc 60
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 201 gaggagatgtcatatttttttcacacacagattttataaataaacttatttattttttcc 260

                                                                       
Query: 61  aaattttcatatatacagacacacatataatctttgatcgcatttcttcacattatgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattttcatatatacagacacacatataatctttgatcgcatttcttcacattatgccc 320

                                                                       
Query: 121 tcttttccattcttgcctgtcatgccactgtatccctactctgtgtgtgtgtgtgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttccattcttgcctgtcatgccactgtatccctactctgtgtgtgtgtgtgtgtgt 380

                                 
Query: 181 gtgtgtgtgtatgtgtgtgtgt 202
           |||||||||| |||||||||||
Sbjct: 381 gtgtgtgtgtgtgtgtgtgtgt 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)