Query= MSMg01no231_i04.b1 MSMg01no231_i04.b1 CHROMAT_FILE:
MSMg01no231_i04.b1 PHD_FILE: MSMg01no231_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:49 2005
(323 letters)
>mm_chr4_30411237_30411962
Length = 726
Score = 528 bits (273), Expect = e-154
Identities = 308/321 (95%), Gaps = 5/321 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggatcatggtaaagatctataatttcaatgcttgggaaataaggcaagagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaggatcatggtaaagatctataatttcaatgcttgggaaataaggcaagagga 266
Query: 65 tccaagtcatcctccacttgatagtgagactgaagccactgtagcctttatgagatcttg 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 tccaagtcatcctccacttgatagtg-gactgaagccactgtagcctttatgagatcttg 325
Query: 125 tccaataaaaaaacagaataggtgtgagatgggtcatccagaatgatggctgctacagag 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccaataaaaaa-cagaataggtgtgagatgggtcatccagaatgatggctgctacagag 384
Query: 185 tggtaacctgtgttctagttctaggacctatatagtggaaagagaacagact---tcaac 241
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 385 tggtaacctgtgttctagttctaggacctatatagtggaaagagaacagactacttcagc 444
Query: 242 ttatctgattcctacatatacaccaaaacatttctacatatactcaataacatctatacc 301
|||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 445 ttatctgatttctacatatacaccaaaacatttctgcatatacttgataacatctatacc 504
Query: 302 cgaacacacacacacacacac 322
||||||| ||||| ||||||
Sbjct: 505 tgaacacatacacatacacac 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 726
Length adjustment: 9
Effective length of query: 314
Effective length of database: 717
Effective search space: 225138
Effective search space used: 225138
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_i04.g1 MSMg01no231_i04.g1 CHROMAT_FILE:
MSMg01no231_i04.g1 PHD_FILE: MSMg01no231_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:49 2005
(303 letters)
>mm_chr4_30593610_30594312
Length = 703
Score = 571 bits (295), Expect = e-167
Identities = 301/303 (99%)
Strand = Plus / Minus
Query: 1 atagcagctatggataaaaacatcctctggttctgtacaagagtggacatatcaacagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atagcagctatggataaaaacatcctctggttctgtacaagagtggacatatcaacagtc 444
Query: 61 aggtataaataataagcccaagggccaaaccctttattgctgaattatttgttactagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggtataaataataagcccaagggccaaaccctttattgctgaattatttgttactagca 384
Query: 121 gattcgaaaagatgtgttattgtgtatttattggtggccctatcaggttccaatagacac 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatttgaaaagatgtgttattgtgtatttattggtggccctatcaggttccaatagacac 324
Query: 181 ctgtaatccaatatcacacaggtaacattgtttaaaaaaagtgtgttataaaacaaaacc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 ctgtaatccaatatcacacaggtaacattgtttaaaataagtgtgttataaaacaaaacc 264
Query: 241 caaaaactatgaatatttgaaagggggaattagctagatggagttgaaggtgtttgaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaaaactatgaatatttgaaagggggaattagctagatggagttgaaggtgtttgaagg 204
Query: 301 gag 303
|||
Sbjct: 203 gag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
