CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACTGAATGGAACTTAAAGATGAGAGACATCAAAGCCCACCTT
CCACAGTGATATACTTCCTCTAACTAGGCTACACTTATTTCATCAAGGCT
ATGTTTCCTAATAGTGCCGTTCTGTATGGGTCAAAATTTCAAACACGTGA
ATCTATGGCTGTGAAGTCTATTGATACAACCACAGATGTGTTTTCCAGGT
GATCCTAAATCCTATTAGGTCTAAACCCACATAACATCTTTCCCATTCAG
AGCCTTGATACTTAATGTCAGTTGCTTCATGTTTCACTCTATGTATCTAC
AAAATGAAAACGATTTCTCTACCACCCTTACAGATTTCCCAAAATTGTTG
CTTGAGATCATAGGACAGCAATTGGCTATCTACAGCTAACATCAATACAT
ACTTGTAGAATGTAACAAGACTGAGAATGACAAATCACTCAGAGACAGAA
CAAATTTTACAACTCAAGAGTCATGAACAATCTTTTAAAGTCACTCATAC
AAAGATAGGAGCAAAACCTAAACTTAACAAATCTAGCAGCGACATTCTCT
ATGTTTATTAAGGTATTTCCAAGCTTTTTCATAAGAACGTCTGTCTTTAA
ACAATTTCTAATTGATTATTGGACTTTAAGCATGTATCTATCAGTTGCAT
TCTGATCACAAATACACACATGATT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCACTTGCTGGACTGGTTCTTATC
TGCAAAGAGGTAGGTTTGTGAAGCACTATCTTCCTCAGGTAGAAGGTGTC
ATGGGTCTGGCGCTCCAGACCTGGTCAGAGTAGGGGAAACCCTGACAGAA
AAAGGGAGTCTTTCATCTTTCACCAAGCTAGGAGGCCCTATCCAGACATG
GTAGACTTTGACCTTAACTAGGAGGATTTCTCACTACAGATTTACTAAAA
TATAAATTGTTGATGAGCAAGATAATTCTATCAAGAACCATTGCTTTCTC
TAAATGCTGCATCTTTTCTTGGCCCCCATTTTCTATTATGTAATTATTAC
TGTGTTCAATAGGACATGCGCAAAAATGTTCCCTTTTTTAAAGAATAATA
TCTATTTTACTATTAACAAAACAAGGTATTCCACTGTTTTAGTCCCTGCA
GCTATGTGGAATTTATCCTGTTTCCACGTTTGCAGAGGATTCGTGTCATA
CACTAAGCTAATCTGGGTCCCATTTACCTTGCCACAACTGTTTACAATAT
TGTCAGCCTGACTCAGGTCAATGAAAATAATATTATTTGTTGCTGATATT
ATGAAGAGGACAGAAGTTCTCATCAATGAAGTAATGAATAGATGGCTATA
TATATATTTAACACAAGACAACG

Query= MSMg01no232_d16.b1 MSMg01no232_d16.b1 CHROMAT_FILE:
MSMg01no232_d16.b1 PHD_FILE: MSMg01no232_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:40 2005
         (315 letters)



>mm_chr4_75089572_75090286
          Length = 715

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacactgaatggaacttaaagatgagagacatcaaagcccaccttccacagtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggaattccacactgaatggaacttaaagatgagagacatcaaagcccaccttccacagtg 642

                                                                       
Query: 64  atatacttcctctaactaggctacacttatttcatcaaggctatgtttcctaatagtgcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atatacttcctctaactaggctacacttatttcatcaaggctatgtttcctaatagtgcc 582

                                                                       
Query: 124 gttctgtatgggtcaaaatttcaaacacgtgaatctatggctgtgaagtctattgataca 183
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 581 gttctgtatgggtcaaaatttcaaacacgtgaatctatggatgtgaagtctattgataca 522

                                                                       
Query: 184 accacagatgtgttttccaggtgatcctaaatcctattaggtctaaacccacataacatc 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 accacagatgtgttttcctggtgatcctaaatcctattaggtctaaacccacataacatc 462

                                                                       
Query: 244 tttcccattcagagccttgatacttaatgtcagttgcttcatgtttcactctatgtatct 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttcccattcggagccttgatacttaatgtcagttgcttcatgtttcactctatgtatct 402

                       
Query: 304 acaaaatgaaaa 315
           ||||||||||||
Sbjct: 401 acaaaatgaaaa 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_d16.g1 MSMg01no232_d16.g1 CHROMAT_FILE:
MSMg01no232_d16.g1 PHD_FILE: MSMg01no232_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:40 2005
         (335 letters)



>mm_chr4_74968145_74968879
          Length = 735

 Score =  632 bits (327), Expect = 0.0
 Identities = 333/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctattatgtaattattactgtgttcaataggacatgcgcaaaaatgttcccttttttaa 60
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 201 tctattatgtaattattactgtgtttaataggacatgtgcaaaaatgttcccttttttaa 260

                                                                       
Query: 61  agaataatatctattttactattaacaaaacaaggtattccactgttttagtccctgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaataatatctattttactattaacaaaacaaggtattccactgttttagtccctgcag 320

                                                                       
Query: 121 ctatgtggaatttatcctgtttccacgtttgcagaggattcgtgtcatacactaagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatgtggaatttatcctgtttccacgtttgcagaggattcgtgtcatacactaagctaa 380

                                                                       
Query: 181 tctgggtcccatttaccttgccacaactgtttacaatattgtcagcctgactcaggtcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgggtcccatttaccttgccacaactgtttacaatattgtcagcctgactcaggtcaa 440

                                                                       
Query: 241 tgaaaataatattatttgttgctgatattatgaagaggacagaagttctcatcaatgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaataatattatttgttgctgatattatgaagaggacagaagttctcatcaatgaag 500

                                              
Query: 301 taatgaatagatggctatatatatatttaacacaa 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 taatgaatagatggctatatatatatttaacacaa 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)