BAC Information

Click to search

BAC

Clone NameMSMg01-232E14
Chromosome4 (Build37)
Map Location 148,620,233 - 148,754,045
singlet/doubletdoublet
Overlap geneKif1b, LOC100041794, Ube4b
Upstream genePtchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd
Downstream geneRbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232E14.T7 (MSMg01no232_e14.b1)MSMg01-232E14.TJ (MSMg01no232_e14.g1)
ACCAG398841AG398842
length733736
length of high quality
(start - end)
271 (45 - 315)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no232_e14.b1 PHD_FILE: MSMg01no232_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:44 2005CHROMAT_FILE: MSMg01no232_e14.g1 PHD_FILE: MSMg01no232_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,753,779 - 148,754,045)(148,620,233 - 148,620,510)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGAGTCGCTGGGTTATTAACCTGTATCGCTCGCAAGCTGTGGTA
GGCATGCGCCTGCCTCCATGATTCTGGCAGCCTTTTGTCCACGAGGAAGT
GAAGACGCCCTTCCTCCCCTGTCATTCCTCCTGTCATCTGCACACAAAAA
CCAAGCACTCCACCTTCTTCTGTGATCTAGTCCTCGGAGACTCTGGACAG
TGTTTTGAGAAATGGGGCTCACAGGATGCCTTTTTGGACTGGGCCGGTGT
CTGCTCTTTCTATGATTTCTGCGTTTCTGTCTTGACGTCTGATTGCATGT
ATTTTCATTCTCTCANAACCAGCGCCCGCAGCCCAGGAATCTGGTGGCCT
CCTTTTTCCCCCCCCCCAAAAAAAATCAGTAACTCAGGACGGTGTGTTTC
TGCATGTCAGTGCGTACAGATTCCGAGTGTGACATTTACTTTAAATGACA
GTCTGCAGCAGCAGCTTCCTCCTGTTCCCTCTATCCTCTGTCCCTGATGA
CCTTTTTTGCTCTTGTTGTGGTAGTATGTCCAACAGTCCTTTCTCCTTCC
TCTTCCTCGAACTTTCTGCTTATAGCACTGATGATGACGAATAAGAAGAC
CGATTATTACTTCGCTCCCTTAACTTTATTTTTATTATTCCACCCTCCCC
TTTTTTTTTCCCTTCCAACTCTTTACCCTTACT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAGTCAACCAGTACTACTTAGTGGG
ACTCTGTCTCAAAAACAATAAAAATAACCAAGTAAGCAATAACAAAAGCA
AGATTAAAAAGACAGTCCTATAGTTTTACAAGACCATGAATCCTAGGTTA
AGTTTAGCCTTAAAATAGTCAAAGTGTGTGCTGCTCACAGAAGCCATGTG
TACAGTGCTGACGACCTCAGACCTTTCCTCTGAGCCTCACCTGAGCGCAG
CTGAACAGGATGAGCCATCCTCTTGCCATTCACATACGTTTCTGAGCGCT
CACAGGTTTCTCTGGCCCCCCCCCCTCACGAAGAACACAAATGATGTTAG
TATCATAAACCACCCCCCCCAAACAAAGAAAAGTGGGTCACTATCAGGAC
TCACAGGAAACAGAGTGGATCCTTGCAAGCAGGAGACTAAGTGTCTACGA
GACAGGGGCTTTCTGTTAAGTTTCTTTTTGTGGAATTTTGCTATACTTGT
TTGTTTCAAGATTCTAAAACTAAGATCAGTATAGGAAGGTATTGGGAGCT
ACTGCTATGCTAAAAATACTTAACTAGATTTCACAAGCCCCAGAAGATAG
AACACACTAATTTTGGGAAAATCAGATACCGCACGGATCTTCAGTATGAT
ACACAAATCACAGCTAACATTGTGTTTGATGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_e14.b1 MSMg01no232_e14.b1 CHROMAT_FILE:
MSMg01no232_e14.b1 PHD_FILE: MSMg01no232_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:44 2005
         (271 letters)



>mm_chr4_148753575_148754245
          Length = 671

 Score =  509 bits (263), Expect = e-149
 Identities = 266/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgggagtcgctgggttattaacctgtatcgctcgcaagctgtggtaggcatgcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattctgggagtcgctgggttattaacctgtatcgctcgcaagctgtggtaggcatgcg 412

                                                                       
Query: 65  cctgcctccatgattctggcagccttttgtccacgaggaagtgaagacgcccttcctccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cctgcctccatgattctggcagccttttgtccacgaggaagtgaagacgcccttcctccc 352

                                                                       
Query: 125 ctgtcattcctcctgtcatctgcacacaaaaaccaagcactccaccttcttctgtgatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctgtcattcctcctgtcatctgcacacaaaaaccaagcactccaccttcttctgtgatct 292

                                                                       
Query: 185 agtcctcggagactctggacagtgttttgagaaatggggctcacaggatgcctttttgga 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agtcctcggagactctggtcagtgttttgagaaatggggctcacaggatgcctttttgga 232

                                      
Query: 245 ctgggccggtgtctgctctttctatga 271
           |||||||||||||||||||||||||||
Sbjct: 231 ctgggccggtgtctgctctttctatga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no232_e14.g1 MSMg01no232_e14.g1 CHROMAT_FILE:
MSMg01no232_e14.g1 PHD_FILE: MSMg01no232_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:44 2005
         (281 letters)



>mm_chr4_148620030_148620710
          Length = 681

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gtcaaccagtactacttagtgggactctgtctcaaaaacaataaaaataaccaagtaagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gtcaaccagtactacttagtgggactctgtctcaaaaacaataaaaataaccaagtaagc 263

                                                                       
Query: 64  aataacaaaagcaagattaaaaagacagtcctatagttttacaagaccatgaatcctagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aataacaaaagcaagattaaaaagacagtcctatagttttacaagaccatgaatcctagg 323

                                                                       
Query: 124 ttaagtttagccttaaaatagtcaaagtgtgtgctgctcacagaagccatgtgtacagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaagtttagccttaaaatagtcaaagtgtgtgctgctcacagaagccatgtgtacagtg 383

                                                                       
Query: 184 ctgacgacctcagacctttcctctgagcctcacctgagcgcagctgaacaggatgagcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgacgacctcagacctttcctctgagcctcacctgagcgcagctgaacaggatgagcca 443

                                                 
Query: 244 tcctcttgccattcacatacgtttctgagcgctcacag 281
            ||||||||||||||| || ||||||||||||||||||
Sbjct: 444 ccctcttgccattcacgtatgtttctgagcgctcacag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)