BAC Information

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BAC

Clone NameMSMg01-232H09
Chromosome4 (Build37)
Map Location 54,575,930 - 54,576,100
singlet/doubletsinglet
Overlap geneLOC666901
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232H09.T7 (MSMg01no232_h09.b1)MSMg01-232H09.TJ (MSMg01no232_h09.g1)
ACCAG398962AG398963
length746794
length of high quality
(start - end)
315 (36 - 350)172 (69 - 240)
definitionCHROMAT_FILE: MSMg01no232_h09.b1 PHD_FILE: MSMg01no232_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:57 2005CHROMAT_FILE: MSMg01no232_h09.g1 PHD_FILE: MSMg01no232_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTATCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTTAGTTCTGTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTTTTTATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TATTTTTTACTCGCCCCCCGCCCCTATGTGAAGTTCTTTGATCCACTTAT
ATTTGACCCCCCCACCAAGAAATAAATATGGATCTATGCGCCTTCTTCTA
CATGATAACACCCATCTGCGCCACTACCTTTTGCTGAAAATGCTGCCTTT
CTTCTACTGGATGGCTTTATCTTCCTTGTCCATTATCCCGTGTCCCTATG
CTGTGTCGTTCTTTTCCCGTTTCCTCCCCTCTATTCTTTTGTTCTACTTG
TTCCGCCCCTCATTTTTCCCCCCTGCTCTTTCTCCCCTTTCTTGCTTTGT
TTTTCTCCTTCTCCCCTCCCTTCCCTTCCTTTCCCTTCCCCCTTTTCCCT
TATTCCCCTTACAACACCCCTTTTCCCCCCTTTCCCCCTTTTTTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCAGAAATTCTCTTATGCCTTCAAACAGACTTCTAAGC
ATTTGAAGTCACATCTGATTGCTCTGGTTGAAACATCTGGTCTCTGAAAA
ATTGTTTCCTAAGACTCAAAAGCAGAAGTCCTATAGTATAAAACTGACCT
TCATTTGTTTTATTTGGGGGGGGTGTTTAGTGTATATTTCGCTTTCCTTT
CTTATCCTACTATCTTTAAATCCATCATTATTACCTCTCCCTTTCCTCCC
TATTTTCCTACCCTTCCTTTTTTTTTCTCCCCCCCTTTCCCCTTTCCTTT
TTCTTCTTTTTTCTTCACCCCCCCCTCCTACATCTACTTTCACCTTATCA
ATTTTTATTTTTTTTTCCCCCCCCCCTCTTAAAAATATAATAACATCTCT
AAACTCTCTTAACCCACTTTCCTATATTTCTTTCTGCTTCCTCTACAACT
TTCTTGCACTATCAATACAATCACTCTTATTTATTACTCGACTTTATTAC
TCTAATATCCCCCTTATATATAATATTTTAACTATTGATACCTTAAATTT
AATTAGTTTCCCTTCATACTGTAAATAATCCCTCCATTTCTTCTAGTTTT
GATCTTGTTTCATCTTCTTATTCTATCTCACTCTTTTTGCCCGCCCATTT
TTACACCACCATATTACATCTCTTACTTACACTCCCTTTTTTCCTTCTTT
TTTCTTTTATTTTTTATTATTCTTTTTATATACCTCTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_h09.g1 MSMg01no232_h09.g1 CHROMAT_FILE:
MSMg01no232_h09.g1 PHD_FILE: MSMg01no232_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:57 2005
         (172 letters)



>mm_chr4_54575730_54576301
          Length = 572

 Score =  331 bits (171), Expect = 2e-95
 Identities = 171/171 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcttatgccttcaaacagacttctaagcatttgaagtcacatctgattgctctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attctcttatgccttcaaacagacttctaagcatttgaagtcacatctgattgctctggt 312

                                                                       
Query: 61  tgaaacatctggtctctgaaaaattgtttcctaagactcaaaagcagaagtcctatagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgaaacatctggtctctgaaaaattgtttcctaagactcaaaagcagaagtcctatagta 252

                                                              
Query: 121 taaaactgaccttcatttgttttatttggggggggtgtttagtgtatattt 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaaactgaccttcatttgttttatttggggggggtgtttagtgtatattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)