BAC Information

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BAC

Clone NameMSMg01-232J07
Chromosome4 (Build37)
Map Location 83,334,961 - 83,335,154
singlet/doubletsinglet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2, LOC100040660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232J07.T7 (MSMg01no232_j07.b1)MSMg01-232J07.TJ (MSMg01no232_j07.g1)
ACCAG399041AG399042
length731790
length of high quality
(start - end)
194 (127 - 320)113 (181 - 293)
definitionCHROMAT_FILE: MSMg01no232_j07.b1 PHD_FILE: MSMg01no232_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:06 2005CHROMAT_FILE: MSMg01no232_j07.g1 PHD_FILE: MSMg01no232_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAACCTTTCCTAAACAACAGGTAGCAATACCTTTACACTACAAG
GTACTTCTTGATGTTGTTTTACCTCACCACAGATTTCCTGAGGCTGGTCA
GAAAGAAGTCACAGTGATGCTATCAATATACAATCCTGATATTTAAAGTA
GTTTAAGTTCTCAGAAAGGGGAGCAGCTGGGATGTAGGTCGGTGGTAGAT
TGCTAACCTCACATGCACAAGACTCTGGGTTTGAACCCAGCACTAGAGGG
GGAAGGAGGGAGAAAGGAAGGATATTGAGTTCCAAAAGACACAGAGGGTT
TTCCATAGGCATTATAGTATATATTCTCGAGTGGTTTTAGTAACCTCTTG
CCTGTCCTTCTATGTCTCTACCCCCCACACTTGACATGAACTGATAGTAT
GACCCGTGTCTTACACCTTGGTTATGATGTCAGGTTTTGTTTTTGTTTTA
GCACACACCAGTGTTTATTTCTCCTGTCCTATTGCGCTCATGTGTGCGTC
TTTTGCCCTTGCCTGACGCACAGTTTTGTTTGCTTTCATTCCCTCCACAT
TTATCACCCGTTGCTATGCCCCCTTTTAGTCCAACATTTTTTACTTCCCC
CCTCCGTTATCTTCCTTTCCCTACCCACTTTCCCTTGTCATCTGTTTATC
CGCCTTTTTATCCCCTTTTCGCCTTTCTTTA
ACTTGCTCCCTTTCCTCTTTTTATTCCTTCTTCTCTCTCTCCAACANNAA
ANNACTATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGGAGCTGGTTCTTCACT
CCTATCATGCGTGTTCTGACGACTGACCCGGTCCTCAGGCTTGGATGCAA
GCGTCTTTACTGGTTGGGCCATTTCACTGGCTGAAGACCTTTGAAGACAC
CACAGCTCATGCCAACATCTCTCTCATTAAGCTTTGTGTGTGTACTTGTG
TGTGAGCATAAGTGTATTCTACACATGTGTGGAGGGCCTCACCTCCCACC
TTGTTTGAGACCGCCTCTTCTCACTGCTTCTTTCGCTGATCTCGTACGCT
CACAAGCTTCCAGAGGTTTTTCTGTCTCTGGCTCCTCCTGCTGTTACATT
TGCTTGCTTTAATATGGGCTACCCCCCATCTGAACCTCATTCCTCATACT
TGTCCAGAAAATACTTTACCCACAGTATTATTAATTGTTCAGTTGTTGTG
ATGAGGCTACCATGACCATGGTATCTCTATGAATGAGAACATTTAACTGT
GTTGTTATAGTCTTTCGTTTCTCCTTATTTTTTCTTTCCCCCTCATTTTT
CTTATTCTCTTTTTCTTATGTCTGTTCATAACTTTCATTTTCCCACTATT
TCTTTTCTTTTTTTCTTCTCTTTCTTCCTTTGTCTTTTTCCCCTTATTAA
TTCCTGTCTCCTTTTTTCCTTTTTTTTCCCCCTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_j07.b1 MSMg01no232_j07.b1 CHROMAT_FILE:
MSMg01no232_j07.b1 PHD_FILE: MSMg01no232_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:06 2005
         (194 letters)



>mm_chr4_83334761_83335354
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacagatttcctgaggctggtcagaaagaagtcacagtgatgctatcaatatacaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccacagatttcctgaggctggtcagaaagaagtcacagtgatgctatcaatatacaatcc 335

                                                                       
Query: 61  tgatatttaaagtagtttaagttctcagaaaggggagcagctgggatgtaggtcggtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgatatttaaagtagtttaagttctcagaaaggggagcagctgggatgtaggtcggtggt 275

                                                                       
Query: 121 agattgctaacctcacatgcacaagactctgggtttgaacccagcactagagggggaagg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 274 agattgctaacctcacatgcacaagactctgggtttgatcccagcactagagggggaagg 215

                         
Query: 181 agggagaaaggaag 194
           ||||||||||||||
Sbjct: 214 agggagaaaggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)