Query= MSMg01no232_l02.b1 MSMg01no232_l02.b1 CHROMAT_FILE:
MSMg01no232_l02.b1 PHD_FILE: MSMg01no232_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:14 2005
(340 letters)
>mm_chr4_49180379_49181118
Length = 740
Score = 592 bits (306), Expect = e-173
Identities = 315/318 (99%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtaagcgaggtgcattgaagactccacagtagccgggagataaatgctgggaa 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 471 gaattcagtaagcgaggtgcattgaagactccacagtagccaggagataaatgctgggaa 412
Query: 65 atcagatgccagggttatgagagcagcttgaagtcagaggaaaagagagcatctcatacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcagatgccagggttatgagagcagcttgaagtcagaggaaaagagagcatctcatacc 352
Query: 125 aaccatgtgctgaatgctgtcaaacagaccaagcagaggagcgcccacaagacactttca 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 351 aaccatgtgctgaatgctgtcaaacagaccaagcagaggagcacccacaagacactttca 292
Query: 185 ttccaaattctagcaaacccacagaaactggtgctaattaatgaatatacatgcacatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttccaaattctagcaaacccacagaaactggtgctaattaatgaatatacatgcacatat 232
Query: 245 tctaccaactctagttctgacagtccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tctaccaactctagttctgacagtccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 172
Query: 305 tgtgtgtgtgtg-tgttt 321
|||||||||||| |||||
Sbjct: 171 tgtgtgtgtgtgatgttt 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_l02.g1 MSMg01no232_l02.g1 CHROMAT_FILE:
MSMg01no232_l02.g1 PHD_FILE: MSMg01no232_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:14 2005
(292 letters)
>mm_chr4_49122845_49123536
Length = 692
Score = 534 bits (276), Expect = e-156
Identities = 288/292 (98%)
Strand = Plus / Plus
Query: 1 tgtgccacgtaatgttcaggaatccccctggaatttgtctgattatcccgtccacatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tgtgccacgtaatgttcaggaatccccctggaatttgtctgattatcccgtaaacatcct 260
Query: 61 tgtcagctgccaggaagcagctcagtgacatatcagtgactactatagagtccccttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagctgccaggaagcagctcagtgacatatcagtgactactatagagtccccttcac 320
Query: 121 aaaaacatgtcttccttccctcctctgtcaatgttaacagggagtaaatactgtaatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaacatgtcttccttccctcctctgtcaatgttaacagggagtaaatactgtaatgat 380
Query: 181 gagggaatcccggtagggcgatgaacatttgtaaacacatgattttcaactaagatactt 240
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggaaccccggtagggcaatgaacatttgtaaacacatgattttcaactaagatactt 440
Query: 241 taaattaactcacagagttgtaaataattgttgtgctaggtgaccagcctgt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattaactcacagagttgtaaataattgttgtgctaggtgaccagcctgt 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
