BAC Information

Click to search

BAC

Clone NameMSMg01-232L11
Chromosome4 (Build37)
Map Location 92,934,903 - 92,935,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125
Downstream geneTusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232L11.T7 (MSMg01no232_l11.b1)MSMg01-232L11.TJ (MSMg01no232_l11.g1)
ACCAG399135AG399136
length837738
length of high quality
(start - end)
220 (45 - 264)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no232_l11.b1 PHD_FILE: MSMg01no232_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:16 2005CHROMAT_FILE: MSMg01no232_l11.g1 PHD_FILE: MSMg01no232_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAGCCCTCCTTTATATAATTGATAAATGGGCTGAGAATACCCAT
GATACATCCCACAGACCCAAAGTCGTCAAACAGAAAGGCAGGTCCAAGTG
AGACTGCTTCAATCCCACTTAGAAGAGGTAATAATAATATAATGAGGGAA
GGCAAGGGAGGGAACACACAGGGTGAGTAGAGGGGAGGAGAGGGAAATAA
GGGGGCAGGATCAGGTATGTTTCCTTCTTTCCCCTTCTCTCTCCCCCCCC
TTCCGTCTTTCTTTCTTCTTCTTTTTTTTTTCTCTTTTCCCTCCCCCCTT
TCCTTCCCCCGTTTTTCTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCGTT
ATTCCGATTCTACGATTCTTTTATACGCTTTTTTCCCCCCCCCCTTTATA
AATAAAAAAACTTTCCCTAACTTGCTCTTTTCTATTCTCCCCCACCCCTT
TCTCTCTTCCCCTTCCCTTTATTTCCCCATTTCTTGTTCACCCCTTTTCC
CCCTTCTTCCCCCTTCCACCACCTTTTTCCCCTTTTCCCCTTCTTCCCTT
TTTTCACCTTACCTTTCTTCCCCTCCCTATTCCCCCTTTTTCCCTACTCC
CCTCCTTATTTTTTTTTTCTCTTTATCTTCCCCCCCCCCTTTTTTTTCCC
CCCTTCTCCTTTTCCCCCCTCTTTCCTTTCCTTCCTTTTCCCTCTCCCCC
CTCTCCCTTCCTTTCACTATCCTCTCCCACCCTCTTCCCTTTCTTCCCTT
TCTTCCACCCTTTTTTTCCCTTTTTTCCCCTTCATTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGCTTGTAAATGTGACTTTAA
ATGACTACTCTCATCCGAGCTTACTGCAAATTTATAATTGTCTCTTGTGC
CCTGAAGATTCCATTGTCTCCTAAAACTTTAAAAGTACTCTGTCCCCAGT
GCACATTTTCTGTACTAGGGTCAACCTACAAAAATTGCTAATGGACAGGC
ATTTTGCATTGGCTGCATGAATTACAGGTGAAAGAATCAGATAATGAGAC
TTATCCCAGTAGTGAATGGGAAGAAGGTATATGATGAACTCTCAACTAGG
TAACTGTGTCATTCTTGTCATTTCCAGCTCTTACACTCAAGGGGGCACCA
ATTAATACCTGAAAGTAAAACCCCAAAAGCCACTTAAAGAATATTATAGG
GTAATGAAAGGACTTGTTAAAGAGACCAGAGAACCAGTAGCCTTATGACC
TAAAACAAGATGACTGCCATTACTCTGATATTACACCTCATGCAATTAAC
AGAAGTGCCAATTAGTCCCCAGAAATGGCAAAGCAGGTACACTTCCAGCT
CCTAAATAGCTGACTGAATTAGAAAAGACGAAATAGAAGTGGCACATTGC
AGCGTAAAGCTCCATAAGGCAGATTTAGACATAAAACAGATTCTTATTAT
AATTTCATAAGAAGAGAAGCAGTTTGAAAGAACTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_l11.g1 MSMg01no232_l11.g1 CHROMAT_FILE:
MSMg01no232_l11.g1 PHD_FILE: MSMg01no232_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:16 2005
         (293 letters)



>mm_chr4_92934703_92935395
          Length = 693

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagcttgtaaatgtgactttaaatgactactctcatccgagcttactgcaaatttata 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 caaagcttgtaaatgtgactttaaatgactactctcatctgagcttactgcaaatttata 432

                                                                       
Query: 61  attgtctcttgtgccctgaagattccattgtctcctaaaactttaaaagtactctgtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 attgtctcttgtgccctgaagattccattgtctcctaaaactttaaaagtactctgtccc 372

                                                                       
Query: 121 cagtgcacattttctgtactagggtcaacctacaaaaattgctaatggacaggcattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagtgcacattttctgtactagggtcaacctacaaaaattgctaatggacaggcattttg 312

                                                                       
Query: 181 cattggctgcatgaattacaggtgaaagaatcagataatgagacttatcccagtagtgaa 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cattggctgcgtgaattacaggtgaaagaatcagataatgagacttatcccagtagtgaa 252

                                                              
Query: 241 tgggaagaaggtatatgatgaactctcaactaggtaactgtgtcattcttg 291
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgggaagaaggtagatgatgaactctcaactaggtaactgtgtcattcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)