BAC Information

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BAC

Clone NameMSMg01-232M03
Chromosome4 (Build37)
Map Location 32,530,242 - 32,530,524
singlet/doubletsinglet
Overlap geneBach2
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232
Downstream geneGja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232M03.T7 (MSMg01no232_m03.b1)MSMg01-232M03.TJ (MSMg01no232_m03.g1)
ACCAG399165AG399166
length722728
length of high quality
(start - end)
367 (45 - 411)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no232_m03.b1 PHD_FILE: MSMg01no232_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:19 2005CHROMAT_FILE: MSMg01no232_m03.g1 PHD_FILE: MSMg01no232_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTGCAAATACCTCCTCAGGCTTGAACCCCAACGGGTCTTATGAG
GGTTATCAGTCTCTGTATTCATATATTTATTAGTCCTGTTGTGTCTGTTC
CTTGGATGACACCGTTCTTGGAGTCATCAGCCACCTCTGGCTGTTGAGAG
TCTCTCTGCCTCCTTTTGGGTAATGGATCCCTGATCCTTGAGGCAAAGGG
TTTGATGAAGACGTCCCATTTAGGGCTAAGTGCTCCAAAGATTCACTCTG
CCCATTGTTAGTTGCTTCCTACTGTAAGAAGTTTCTCTGATGAGTCTTGA
ATAATGCAGTGATTTACGGGTATAGCGCTATGTCGTGACGAGTATTTTAT
TGGCCTTTGCACACCCATAGTAGTAGTTTTCCCTCTAGGCTTATGAGCTA
TCTAGTCTCAGGTTCTTGGCCATTTGAGCAGTGTCAGATATGGTCTCACT
GAGCAGACCTTAAATCCACACAGAAAATGGTTTGTTATTCCTATAGCATG
CATGTCACTATTGCACCAGTATGTGCAGGGACCCATGGCGTTGACCTGGC
ATAGATGCCTTGAGAGTCATGCAGCATAGGTTTCTCAGCTTAGAGTCCAT
GGCTCCTGAAGCACAATGCGCCTTCCCATTCCTGAGAGATCAAATGCTTC
AGGTAGTGAAGTACTCAGTACT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGAACAGGGGGGACGTCTAGAAA
AGTCTTGGCTTCGTTGCTGAGGCTGGAGCTCAGGATGCAGGAAGCAATCA
TGATCTGCTGATCTGTACCCCAGTTCCACTTTATGAATAATGGACAACTG
ATTGGCATGACTGCCATTTCCAAACCTTGGTCTTATTTCCAAGAGTTCAT
TGAGTTAAATGTATTTCATACTCATTAATAAAGAAAAAATTGCTGCATAT
AAGCCATCAATTATATAGCGTATCTGAAACTATGTTTCCTAGCACTAGAA
TATAGATTATTATATTCTAACTCCCACGCATATAGGTGACTCAATATATT
TTGAAAACATTGAAACACCCCTGTCATTAGAATCTCAAAACAGCTGTGGT
AGAAAGTTTGGTACATGGTAGTATCCTCATCTTACAAAGAAAAAAAGTTT
AACTTAAAAGAAACTATAATACTTGTACAGAATTAAGTAGATATATTTTT
TGTTTATATTAAATTAATAAATATATACATTATATACTATATATACTCAA
AGTGTAGGCGTCTAGCCTTATGATTGAGACAAAGCTTCCTTTCTAAAATC
ACCTGTGGATATCAAAACCTCAGCTCTAAGATTGACATCCCAACTGATCC
TATTTATAAATTGCTATGCACATCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_m03.g1 MSMg01no232_m03.g1 CHROMAT_FILE:
MSMg01no232_m03.g1 PHD_FILE: MSMg01no232_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:19 2005
         (290 letters)



>mm_chr4_32530038_32530727
          Length = 690

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   aacaggggggacgtctagaaaagtcttggcttcgttgctgaggctggagctcaggatgca 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 205 aacaggggagacgtctagaaaagtcttggcttcgttgctgaggctggagctcaggttgcg 264

                                                                       
Query: 65  ggaagcaatcatgatctgctgatctgtaccccagttccactttatgaataatggacaact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaagcaatcatgatctgctgatctgtaccccagttccactttatgaataatggacaact 324

                                                                       
Query: 125 gattggcatgactgccatttccaaaccttggtcttatttccaagagttcattgagttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 gattggcatgactgccatttccaaaccttggtcttatttccaagagttcattgggttaaa 384

                                                                       
Query: 185 tgtatttcatactcattaataaagaaaaaattgctgcatataagccatcaattatatagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 tgtatttcatactcattaataaagaaaaaattgctgcatataagccatcaattatatagt 444

                                                      
Query: 245 gtatctgaaactatgtttcctagcactagaatatagattatta 287
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatctgaaactatgtttcctagcactagaatatagattatta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)