TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTAGCCCTCCTTTATATAATTGATAAATGGGCTGAGAATACCC
ATGATACATCCCACAGACCCAAAGTTGTCAAACAGAAAGGCAGGTCCAAG
TGAGACTGCTTCAATCCCACTTAGAAGAGGTAATAATAATATAATGAGGG
AAGGCAAGGGAGGGAACACACAGGGTGAGTAGAGGGGAGGAGAGGGAAAT
AAGGGGGCAGGATCAGGTATGGGGAGAGGTTTGCTTTTGCCCCCGCCGCC
CGGTGCTCTCCGCATTTTTTTTTTTCGTAAACAAATTCAACTACAAAAAA
ATAAAATTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCAAAGGGAATTACT
CGTTATTATGAAGTGTTTTACTTGTCCCCACCCCAAAAAAAAAAAAAAAA
CTTGCGGTGCGGTGGGGTTGTATTCTTTTTCTCTGTTCTCCCCACCTTTC
CCTTGTCTCTCCTCGCTTTTCGCACCCCTTTTTATTTCCTTACTACTACA
CTATATCCCCTTTTTTGTCCCTACACATTTCCTGCCCTTATCCCCTCTTC
CCGCATTCCTTTTATTTTTTCATCATTCCTCTAAACCTTTCATTATCATA
TTCCCTCTTTTTGTATTTATTCCCTCCATGTTTATTTCCATATTTTTCAT
TCCTTTTATTTCTCCCTCCTTTTTTTCCCCACTTCTCTTTCCTGCCTATT
CTTTTCCACACTCCTCCCCTTTCGCCTTTCTCTTTTTTATTCCTTCCCCA
CACTCCCCCTTTCCTTTCTATTCCCGTTCCCTCCCTTCTTTCTCTCCTTT
TCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGCTTGTAAATGTGACTTTAA
ATGACTACTCTCATCCGAGCTCACTGCAAATTTATAATTGTCTCTTGTGC
CCTGAAGATTCCATTGTCTCCTAAAACTTTAAAAGTACTCTGTCCCCAGT
GCACATTTTCTGTACTAGGGTCAACCTACAAAAATTGCTAATGGACAGGC
ATTTTGCATTGGCTGCATGAATTACAGGTGAAAGAATCAGATAATGAGAC
TTATCCCAGTAGTGAATGGGAAGAAGGTAGATGATGAACTCTCAACTAGG
TAACTGTGTCATTCTTGGCATTTCCAGTTCTTAGACTCAAGGGGGCACCA
ATTAATACCTGAACCCAAAATTTGAAAAGCCACTTAAAGAATATTATAGG
GTAATGAAAGGACTTGTTAAAGAGACCAGAGAACCAGTAGCCTTATGACC
TAAAACAAGATGACTGCCATTACTCTGATATTACACCTCATGCAATTAAC
AGAAGTGCCAATTAGTCCCCAGAAATGGCAAAGCAGGTACACTTCCAGCT
CCTAAATAGCTGACTGAATTAGAAAAGACGAAATAGAAGTGGCACATTGC
AGCGTAAAGCTCCATAAGGCAGATTTAGACATAAAACAGATTCTTATTAT
AATTTCATAAGAAGAGAAGCAGTN

Query= MSMg01no232_m12.g1 MSMg01no232_m12.g1 CHROMAT_FILE:
MSMg01no232_m12.g1 PHD_FILE: MSMg01no232_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:21 2005
         (634 letters)



>mm_chr4_92934360_92935393
          Length = 1034

 Score = 1156 bits (598), Expect = 0.0
 Identities = 625/634 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagcttgtaaatgtgactttaaatgactactctcatccgagctcactgcaaatttata 60
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 834 caaagcttgtaaatgtgactttaaatgactactctcatctgagcttactgcaaatttata 775

                                                                       
Query: 61  attgtctcttgtgccctgaagattccattgtctcctaaaactttaaaagtactctgtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 attgtctcttgtgccctgaagattccattgtctcctaaaactttaaaagtactctgtccc 715

                                                                       
Query: 121 cagtgcacattttctgtactagggtcaacctacaaaaattgctaatggacaggcattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cagtgcacattttctgtactagggtcaacctacaaaaattgctaatggacaggcattttg 655

                                                                       
Query: 181 cattggctgcatgaattacaggtgaaagaatcagataatgagacttatcccagtagtgaa 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cattggctgcgtgaattacaggtgaaagaatcagataatgagacttatcccagtagtgaa 595

                                                                       
Query: 241 tgggaagaaggtagatgatgaactctcaactaggtaactgtgtcattcttggcatttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgggaagaaggtagatgatgaactctcaactaggtaactgtgtcattcttggcatttcca 535

                                                                       
Query: 301 gttcttagactcaagggggcaccaattaatacctgaacccaaaatttgaaaagccactta 360
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 534 gttcttagactcaagggggcaccaattaatacctgaaagtaaaatttgaaaagccactta 475

                                                                       
Query: 361 aagaatattatagggtaatgaaaggacttgttaaagagaccagagaaccagtagccttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 474 aagaatattatagggtaatgaaaggacttgttaaagagaccagagaaacagtagccttat 415

                                                                       
Query: 421 gacctaaaacaagatgactgccattactctgatattacacctcatgcaattaacagaagt 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 414 gacctaaaacaagatgactgccattactctgatattacatctcatgcaattaacagaagt 355

                                                                       
Query: 481 gccaattagtccccagaaatggcaaagcaggtacacttccagctcctaaatagctgactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gccaattagtccccagaaatggcaaagcaggtacacttccagctcctaaatagctgactg 295

                                                                       
Query: 541 aattagaaaagacgaaatagaagtggcacattgcagcgtaaagctccataaggcagattt 600
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aattagaaaagacgaaatggaagtggcacattgcagcgtaaagctccataaggcagattt 235

                                             
Query: 601 agacataaaacagattcttattataatttcataa 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 agacataaaacagattcttattataatttcataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)