Query= MSMg01no232_p23.b1 MSMg01no232_p23.b1 CHROMAT_FILE:
MSMg01no232_p23.b1 PHD_FILE: MSMg01no232_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:37 2005
(696 letters)
>mm_chr4_32801201_32802296
Length = 1096
Score = 692 bits (358), Expect = 0.0
Identities = 367/370 (99%), Gaps = 1/370 (0%)
Strand = Plus / Minus
Query: 328 ctcagtgattaagaacactggttgctcttaaagaagacctcagtttgagttacagcaccc 387
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 1096 ctcagtgattaagaacactggttgctcttaaagaagaccccagtttgagttacagtaccc 1037
Query: 388 acagggcggctcatcactgtctgaaccttcagtgacggggatccaatgccctccctctct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 acagggcggctcatcactgtctgaaccttcagtgacggggatccaatgccctccctctct 977
Query: 448 tctagccttggtgggcaccagacatgcacatgatgtagacgggcatgcaagtaaagcatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tctagccttggtgggcaccagacatgcacatgatgtagacgggcatgcaagtaaagcatc 917
Query: 508 catacacaaaaaa-ttaaaagtatatagtgttacatgacctcaaattacttgcaattaca 566
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 catacacaaaaaaattaaaagtatatagtgttacatgacctcaaattacttgcaattaca 857
Query: 567 gtaaaattataaaataagttaaaatgaagccatgggcactacagcaaatatcgagataaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gtaaaattataaaataagttaaaatgaagccatgggcactacagcaaatatcgagataaa 797
Query: 627 acatttcttgagataaaacatttgctttcatgtcataaacgtatcagtgctaacctaaac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 acatttcttgagataaaacatttgctttcatgtcataaacgtatcagtgctaacctaaac 737
Query: 687 attatgagga 696
||||||||||
Sbjct: 736 attatgagga 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_p23.g1 MSMg01no232_p23.g1 CHROMAT_FILE:
MSMg01no232_p23.g1 PHD_FILE: MSMg01no232_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:37 2005
(657 letters)
>mm_chr4_32721421_32722481
Length = 1061
Score = 1208 bits (625), Expect = 0.0
Identities = 651/663 (98%), Gaps = 8/663 (1%)
Strand = Plus / Plus
Query: 1 aagtctatgatgtatagccaagatttatctttaaaatcctcacaacaactaccaactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aagtctatgatgtatagccaagatttatctttaaaatcctcacaacaactagcaactaca 260
Query: 61 agtagtactattaacagttgtatacattttgggtctgttaatgtgtcttatctgtgcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagtactattaacagttgtatacattttgggtctgttaatgtgtcttatctgtgcttt 320
Query: 121 agaacttgaacttaaaaaatgaaaaccagtctcttaagaagaatatctcagcacttatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacttgaacttaaaaaatgaaaaccagtctcttaagaagaatatctcagcacttatca 380
Query: 181 aaactgccagagtggagataaaccgtaaggatgaagagataaatcatcttcaccaaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactgccagagtggagataaaccgtaaggatgaagagataaatcatcttcaccaaaggt 440
Query: 241 atgtggatgtcacctttcaccagtcacatgaagtatggctttattctcaaaggatgaaac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtggatgtcacctttcaccagtcacatgaagtatggctttattctcaaaggatgaaat 500
Query: 301 atgtatttcactaaagagttatttatggttctggtgtaaatggcaactactctaaatgat 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtatttcacta--gagttatttatggttctggtgtaaatggcaactactctaaatgat 558
Query: 361 ttatagtgacacctatggttactgatggaacattgccacacaatttctaaaatacatagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 ttatagtgacacctatggttactgatggaacattgccacacaatttctaaaatatatagt 618
Query: 421 -----tttctaaatcactggggtcttgctctagtactgcttaccagacaaagtcattgtg 475
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 619 atagttttctaaatcactggggtcttgctctagtactgcttaccagagaaagtcattgtg 678
Query: 476 catgcgttaaattctgctggtcgcatcagaactgagacaccaggagagcagggctgggga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 catgcgttaaattctgctggtcgcatcagaactgagacaccaggagagcagggctgggga 738
Query: 536 agtagctcagtgaagtatgagcccagaacacctagaagaaa-gaaagaaggctgagcaag 594
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 739 agtagctcagtgaagtatgagcccagaacacctagaagaaaagaaagaaggctgagcaag 798
Query: 595 ggaaggcacttggagccaagcctgctgaccagagattagcccttgggatatggatgctag 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggaaggcacttggagccaagcctgctgaccagagattagcccttgggatatggatgctag 858
Query: 655 gag 657
|||
Sbjct: 859 gag 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1061
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1051
Effective search space: 679997
Effective search space used: 679997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
