BAC Information

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BAC

Clone NameMSMg01-233G10
Chromosome4 (Build37)
Map Location 30,625,882 - 30,626,194
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233G10.T7 (MSMg01no233_g10.b1)MSMg01-233G10.TJ (MSMg01no233_g10.g1)
ACCAG399618AG399619
length699699
length of high quality
(start - end)
317 (51 - 367)243 (80 - 322)
definitionCHROMAT_FILE: MSMg01no233_g10.b1 PHD_FILE: MSMg01no233_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:06 2005CHROMAT_FILE: MSMg01no233_g10.g1 PHD_FILE: MSMg01no233_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGCTGAGCATTTTTGGATTTTGAGCTAATCATTATGTT
CAGCTCGCAGTTGACATTTGGGAAAGCATCTCAACCTTTTGGAGCATCCT
ATTCTGTAAACATAACTCCAAGGCAGGCAGGAGTGAAGAGATTAGAGATG
GTATCAGCTTATTCCATGGGAAGAAAACCAATAAAGCTACCTATGAGCAG
AGGCCACCTTTCTCCATTTAATATTAATGCATTATGCAAAATACAGTTAA
AATCTTTATTTTATTCCAGGGATAAATATCCCAGGAGGATATTTCAACAT
GAATCTATATAATGGTTCTTAACATCACCGCACCATAACCTTTTAGGTAC
TGATGATACTACTGTATTTAATGTCCTATTGGCATCAACCCCTACTTGAT
AATCTACTGACAGATGGAATGGGTATCCTGGCATTTTGTCTATTCCCTTG
CCTATTTGTGCATCATTTGACAGGATACTTCTAAGACAGCAAAATTTAGC
CAGAATGTTTTGGTTCATTGTCAGTAGCAATTCTTTTAGCATTATTTTTA
CTTTGCTGATTCAAACTGATATAGGACCCTAATCTTACTCAATCTGATTA
TTAATAATGCTACAACAACTGTGTAGNTTCTGTCTTTTTTCTTCCTAAA
NCCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTCACTCTTTACTGCA
TTTTTTCATAGGGTTATTTGTTTCCCCGGAATCTAACTTCTTGAGTTCTT
TGTTTATATTGGATATAAGTAATCTGTAGGATGTAGGGTTGTTAAAGATA
TTTTCCCAGTTTGTTGGTTGCCATTTTGTTCTATTGACAGTGTCCTTTGC
CTTATAGAGCTTTGTAATTTTGTGAGGTCCCATTTGTCTATTGTTGATTT
TAAAGCATAAGCTATTGTTGTTTTTTTCTTAAAATTTTCCCCTGTGCCCA
TGGGCTCTTGTGNTTTCCCTCTTNNCCCCNNNCCCAATTTNATTGTCTAT
GTTTTTTTTTTTGATATCACAAAATTTTTACCTTAAAAACTTGGGGGGGG
GGGTCATTTACATTTCCAATGTTATCCCAAAAGTACCCCATACCCTCTCC
CACACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCTGT
ACTGAGGCTTATAAAGCTTGCTCGACCCATGGGCCTCTCTTTTCACTGAT
GTCTTATTACGCCATCTTCTGATATCTATGAAGTTAGATCTAATACCTTT
TTTTTTTTTTTTTTACTCAAGCCTCGTTCCTTCCTCGCTTCCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_g10.b1 MSMg01no233_g10.b1 CHROMAT_FILE:
MSMg01no233_g10.b1 PHD_FILE: MSMg01no233_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:06 2005
         (317 letters)



>mm_chr4_30625678_30626394
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgctgagcatttttggattttgagctaatcattatgttcagctcgcagttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgctgagcatttttggattttgagctaatcattatgttcagctcgcagttga 264

                                                                       
Query: 65  catttgggaaagcatctcaaccttttggagcatcctattctgtaaacataactccaaggc 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catttgggaaaggatctcaaccttttggagcatcctattctgtaaacataactccaaggc 324

                                                                       
Query: 125 aggcaggagtgaagagattagagatggtatcagcttattccatgggaagaaaaccaataa 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 aggcaggagtgaagagattagagatggtatcaacttattccatgggaagaaaaccaataa 384

                                                                       
Query: 185 agctacctatgagcagaggccacctttctccatttaatattaatgcattatgcaaaatac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 agctacctatgagcagaggccacctttctccatttaatattaatgcattatgcaaactac 444

                                                                       
Query: 245 agttaaaatctttattttattccagggataaatatcccaggaggatatttcaacatgaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttaaaatctttattttattccagggataaatatcccaggaggatatttcaacatgaat 504

                        
Query: 305 ctatataatggtt 317
           |||||||||||||
Sbjct: 505 ctatataatggtt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)