BAC Information

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BAC

Clone NameMSMg01-233I05
Chromosome4 (Build37)
Map Location 55,723,665 - 55,723,975
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233I05.T7 (MSMg01no233_i05.b1)MSMg01-233I05.TJ (MSMg01no233_i05.g1)
ACCAG399690AG399691
length791723
length of high quality
(start - end)
317 (97 - 413)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no233_i05.b1 PHD_FILE: MSMg01no233_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:14 2005CHROMAT_FILE: MSMg01no233_i05.g1 PHD_FILE: MSMg01no233_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTGTCCGGTCCCCCCCTCTTTTTCTCCACAACCCCCCCACCANNNNAAA
CCCCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCTTGTTTCCCCTCTAAACTGAGCCATATTTCTGACTCTACA
AGGACTTTTGACTGTTCCTGAACCCAGGGCACAGGGCTTGGCTTTCTAAG
GACTATTGCTTAGCTGACTCTGGCAATTAGAGTGAATCTCCATTATCTGT
GTCCATTAAAAATGACCTATATAAGAGAGAGGACTTCCAAAAAGTTTACA
TGTGACAGTGTGTATCTCATTTCTTTGTGGTTAGGAAGAAGGGTGGGTTG
TTTATTAAGAAGTCAGAGATAGTTTTCAACTTTTAAAGAGCTCCAAAAGC
AAGACCTCCTATTCTTTTTTTGTCCCCCATCCCACCCCTTCCCTACCTTC
CAACCTCCACTCCCACACACAACCCCCCGACTACTGCCTTCAGTCGGTGA
CCCAGCATCACAGCTGCAAACCTTTCATGGTCTCTCCAAACAGCTGTTTT
ACCATCCCAGAGGGATAGCAAAGCCAGGGATTTGTACTTGGTGCTTCACA
GATGAGCGTTTTGGAACCTTCAGTCCAGCCTGATAGACGATAGATCATCT
CATCTCCAGCATGCAGCATAGGTTCGTGTGCACACAGGCAATACATCCTA
AGCAGGATTCCTTGCCATTTGCGGTTCACTGCTGTGCGTATGATCTCCCC
TTTAACAAAGATAAAATTGACGTTCTCCTACGTCTTTGTAA
TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGGTTTGATCACTTTAGTTGCAG
TCTTAGTGGTCGAGGCGTATGTCCATTGCGAATTAGTGTGCGCCATCTGT
CTGTCTTTGTCTGTCTGTCTTTCTCTGTCTCTCTGTCTCTGTCTCTGTCT
CTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACA
CACACACACACACATACACACATACACACACACCCCAAACCCAAACCAAA
AAAACCAAAACCAAAAGATCAGGCCCAACACACCCTTTAAGCTATTTATT
GAGAAAAATCTATTTTTTATGCCACCCACCCCTATTTTTAAAACTTTTGA
TGTTTTGTTGTGCTGTTCCGCATTGATAAAGATACAGGTTCTTTCTCTGG
AGCCCAGGCTACCCTCAAACTCATGGCAGTCCTCCTGCCTCAGCCTGGAT
ATCAGTGCTGAGATCACAGGCTGAGCTACTATGTCCTATTTAGGAGTTTT
GTTTTGTTTTGTTTTGGTTTGGTTTGTTTTTGTTTTTCCCCCTNCCTCCT
TTCCCCTCTTCCTCTTTTTTCTTTTTCTCCTTCCCTTTTTTCCCTTTTCC
TCCTCTTCTTTTTCCTCTTTCCCTTTTTTTCCCCCTTTTTTTTCCTCTTT
TCTTTTTTTTCCTTTTTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_i05.b1 MSMg01no233_i05.b1 CHROMAT_FILE:
MSMg01no233_i05.b1 PHD_FILE: MSMg01no233_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:14 2005
         (317 letters)



>mm_chr4_55723461_55724177
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgcttgtttcccctctaaactgagccatatttctgactctacaaggacttttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcctgcttgtttcccctctaaactgagccatatttctgactctacaaggacttttg 456

                                                                       
Query: 65  actgttcctgaacccagggcacagggcttggctttctaaggactattgcttagctgactc 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 actgttcctgaagccagggcacagggcttggctttctaaggactattgcttagctgactc 396

                                                                       
Query: 125 tggcaattagagtgaatctccattatctgtgtccattaaaaatgacctatataagagaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggcaattagagtgaatctccattatctgtgtccattaaaaatgacctatataagagaga 336

                                                                       
Query: 185 ggacttccaaaaagtttacatgtgacagtgtgtatctcatttctttgtggttaggaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggacttccaaaaagtttacatgtgacagtgtgtatctcatttctttgtggttaggaagaa 276

                                                                       
Query: 245 gggtgggttgtttattaagaagtcagagatagttttcaacttttaaagagctccaaaagc 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 275 gggtgggttgtttattaagaagtcagagatagctttcaacttttaaagagctccaaaagc 216

                      
Query: 305 aagacctccta 315
           |||||||||||
Sbjct: 215 aagacctccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)