BAC Information

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BAC

Clone NameMSMg01-233J17
Chromosome4 (Build37)
Map Location 17,666,253 - 17,666,543
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233J17.T7 (MSMg01no233_j17.b1)MSMg01-233J17.TJ (MSMg01no233_j17.g1)
ACCAG399757AG399758
length717720
length of high quality
(start - end)
669 (46 - 714)292 (429 - 720)
definitionCHROMAT_FILE: MSMg01no233_j17.b1 PHD_FILE: MSMg01no233_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:21 2005CHROMAT_FILE: MSMg01no233_j17.g1 PHD_FILE: MSMg01no233_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAGACCTGATAAGCAGCTTCAATGCAGTTGCTGAATATAAAATT
AACTCAAACAAATCAGTGGCATTTCTCTACACAAAGGACAAACAGGCTGA
GAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAA
AATACCTTGGTGTGACTCTAACTAAGGAAGTCAAAGTGCAGTATGATAAG
AACTTCAAGTCTTTGAAGAAAGAAATCAAATTAGTTCACAGAAGATGGAA
AGATCTCCCATGCTAATGGATTGGCAGGATTAATATAGTAAACATGACTA
TCTTGCTGAAAGAAATCTACAGAGTCATCAAAATTCCACTCAATACTTAG
AGTAAAAAGGGTAATTTGCATAGGCAGCTGGCGCCTAAAAGATGGCGCCA
GTCTCTGGTACACCATCTCCATAAACAACATCACTGAGCAGGTGCTAGCC
CGTATCTGGCGCCAACCCCTCCTGAGCAGGTGCTTGCTAATTAAAGTACC
AGCAGACTGACCAATCCCAGGAGGACACATAGCCCTCCCCAGTACTGGGG
TGTATATAAGTAGTCCTCCCTGGGTTCCCGGGGTTCCCGTAGCATCGAGG
AGTTCCTGGAGTAAAGCTGTTGAGAAGAATCTGACCGTGTTGCATTTTTC
CTTACCGGACAAGGTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGATGAGCAAATATAAATATGA
ATAGTTAGGATCTCAAATAGTCTTAATAAACTAAAAGGAAAAAGAAACTT
TGGAAAAGGAAATATAATTTCCATGTTTTCTGATGTAGAAGAGTATTAGT
CTCAGCAATTATAAGTGATCGGTAAGAAGGGCTTAAGAAATGTCACCATC
ATATTACTTAGAAATGCTGGGTACAATACTCAATGACTAACCAAAATCAA
AACGATAGCAGCAACGTTTAAGTAAGGCGTGGAATCTGAGGATCTTCATA
TTGTATGGNCTAACTTGCCCATGCTAGCCTTATGTAAAGAATGCTCATTC
AGAAATAAAGCCTTAATAATCATTGAAATAAATTACAGTAGATCTTTGGA
AACCCTGTTGCATTTCATGTAATGTGGTTGATTAAATAGCTAAGATGGCT
TCTATATTTCATTTTGGTGCATTGTTTTATCAATATCTTACAACGTACGG
CTCATGTAAAGTAGAAATACAATTTATTCACTTGAGAGATGGCTTAGTGC
TTTTTCAGAGGAAGTGAGTTTGCTTGTCAGTATCTCTGTTGGGGATAGCT
TAGATATACCTATTAACTCCATATCTAAAGGATCTGCTCTCTCTTCTGGC
CTGCAAGATCAATCTCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_j17.g1 MSMg01no233_j17.g1 CHROMAT_FILE:
MSMg01no233_j17.g1 PHD_FILE: MSMg01no233_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:21 2005
         (292 letters)



>mm_chr4_17666192_17666883
          Length = 692

 Score =  509 bits (263), Expect = e-148
 Identities = 284/291 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaattacagtagatctttggaaaccctgttgcatttcatgtaatgtggttgattaaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 352 taaattacagtagatctttggaaaccctgttgcatttcatgtaatgtgattgattaaata 293

                                                                       
Query: 61  gctaagatggcttctatatttcattttggtgcattgttttatcaatatcttacaacgtac 120
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 292 gctaggatggcttctaaatttcattttggtgcattgttttatcaatatcttacaatgtac 233

                                                                       
Query: 121 ggctcatgtaaagtagaaatacaatttattcacttgagagatggcttagtgctttttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggctcatgtaaagtagaaatacaatttattcacttgagagatggcttagtgctttttcag 173

                                                                       
Query: 181 aggaagtgagtttgcttgtcagtatctctgttggggatagcttagatatacctattaact 240
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 172 aggaagtgagtttgcttgtcagtatctctgttggggatagtttacatatacctattaact 113

                                                              
Query: 241 ccatatctaaaggatctgctctctcttctggcctgcaagatcaatctcaca 291
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 112 ccatatctaaaggatctgctctctcttctggcctgcaagaacaatctcaca 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)