BAC Information

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BAC

Clone NameMSMg01-233K17
Chromosome4 (Build37)
Map Location 85,180,592 - 85,180,832
singlet/doubletsinglet
Overlap geneA930009N24
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233K17.T7 (MSMg01no233_k17.b1)MSMg01-233K17.TJ (MSMg01no233_k17.g1)
ACCAG399799AG399800
length763742
length of high quality
(start - end)
245 (45 - 289)300 (76 - 375)
definitionCHROMAT_FILE: MSMg01no233_k17.b1 PHD_FILE: MSMg01no233_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:25 2005CHROMAT_FILE: MSMg01no233_k17.g1 PHD_FILE: MSMg01no233_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGGCCATGGCGTTTCTTCACAGCAATCAAGCAGTGACTAAGGCA
GCTCCTGTTCCAGCAGCTGATGGAAGAGTGGCCAATGGCCCTGGAAGTAC
CAGCTTAGCTCTCAGAGGCTACAGAAACCACAATGTAGTAGGACAATTTC
AAGGAAGAGACATGGAACTCTGAGTGACCAACAGACTCCCCAAATCTCAC
CCAGCTAGCATTTGGCCATGCGAAGTAATCTGCTTAGGGGAAATTTANNA
AAAAAATGTCCAGCAGGAAGGGAATGCTGCCAGAGATGGTCAAAGAGGCT
CACAAGTGGACCGGAGTCAAATGCCATTCAAATACTCCAGTCTGCAGGGA
TGCTGATGAGCCCCCCCCCCGACCAATTAAAGTGAGCTACAGCTTTTAAT
GGGAACGGTTCTTTTTTTTGCCCGGAAAGANGGAGGATTTCCCCCCTGTT
TGTTTGTTCAGATTNTTCGGGAACCTTCCACCCCAAAAAACCCTGGGGTG
GGAAAGTTNNNNNTTTGTTGTCGGGGGTGTTTTTTACAAAATGTTTTTAG
GGGTTTATATGGGGGTTTTTGCCGGNCCCCAAAGGGGTGGTCTTGCTAGG
GGCTTTCAATTTTCCTTTTTACCCCCAATAAACTTCCATTTCCCCCCCCC
TCCCCNNCNTTTCCCCTTACTAAAAAAATGTGNNNNTAAAATTTGGATAT
CCCGGGGTTGTTG
GCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATTTCTGTACTCCATTTT
TAAATTTGGTTATTTGGGGTCTTTGTGTTAAATGTTTGAGTTATTTGTAA
ATATTGGATATCAGCCTTCTGTCAGAAGTAGGGTTGATGAAGAACCTTTC
CCAATCTTAGGCTGCCAATTTACCCTATTGACAGTGTCCTTTGCCTTATA
AAAGCTTTACAGTTTTATGAGGTCCCATTTATCAGCTATTGATCTTAGAG
CCTGAGATATTGGTGTTCTGTTCAGGAACTTGTCTCCTGTACCAATTCAT
TGAAGGGTATTTTCTTTTTTCACCTCTCCGACATTTAGTGAGTATGGTTN
TATGTTGAGGTTCTTGACCCACTTGGATTAGAACTTGTGCAGGGTGTTAA
ATATGTATCTATTTTCATTCTTCTATGTGTAGACATCCAGTTATAGCAGC
ACTGTTTGTTGAAGATGCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTGCA
TTGCATAGTTTTGTCTTTATCANAAAATCAAATATCCCTAGGTATGTGGG
TTTATTTCTGCAGTCTCCATTTGATTCCATTGCATCATTATTTCTGTTTT
CGCCCATTTATATGCCTTTTTAATTATACCCGCTGTACTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_k17.b1 MSMg01no233_k17.b1 CHROMAT_FILE:
MSMg01no233_k17.b1 PHD_FILE: MSMg01no233_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:25 2005
         (245 letters)



>mm_chr4_85180336_85180980
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttggccatggcgtttcttcacagcaatcaagcagtgactaaggcagctcctgt 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 gaattccttggccatggcgtttcttcacagcaatcgagcagtgactaaggcagctcctgt 438

                                                                       
Query: 65  tccagcagctgatggaagagtggccaatggccctggaagtaccagcttagctctcagagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tccagcagctgatggaagagtggccaatggccctggaagtaccagcttagctctcagagg 378

                                                                       
Query: 125 ctacagaaaccacaatgtagtaggacaatttcaaggaagagacatggaactctgagtgac 184
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 377 ctacagaaaccacaatgtagtaggacaacttcaaggaagagacatggaattctgagtgac 318

                                                                       
Query: 185 caacagactccccaaatctcacccagctagcatttggccatgcgaagtaatctgcttagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caacagactccccaaatctcacccagctagcatttggccatgcgaagtaatctgcttagg 258

            
Query: 245 g 245
           |
Sbjct: 257 g 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)