BAC Information

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BAC

Clone NameMSMg01-233L23
Chromosome4 (Build37)
Map Location 28,132,845 - 28,133,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842
Downstream geneLOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233L23.T7 (MSMg01no233_l23.b1)MSMg01-233L23.TJ (MSMg01no233_l23.g1)
ACCAG399849AG399850
length707709
length of high quality
(start - end)
315 (46 - 360)326 (384 - 709)
definitionCHROMAT_FILE: MSMg01no233_l23.b1 PHD_FILE: MSMg01no233_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:31 2005CHROMAT_FILE: MSMg01no233_l23.g1 PHD_FILE: MSMg01no233_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTCTTCTCTGTCTCTATCTCTGTCTCTGTCTCTCTCTACACA
CACACACACACACACATACACACATATACATATACTTGGTCTTGAGAACT
GTTTGAGAAGGTCATGGAAGCTTTGTGGGTAGAGCCTTCCTGGAGGAAAT
ATGTCACTGAGAGCAGGGTTTCTGTGTGTGTTTGCAGCCTTCTTCCTTTC
TGGTTCTTCCTCTCTGCATCTGTGTTCACATGAAATGTGACATGCCAGTT
TCTTTCCTGCCTCTCTTGACAGTTATCATACATTCCCCTCTACGATGCCT
TCTATTAATCTGTTTTCACCACCCCCCCCCTCTTCCCAATTTTATATTCT
GTCAATTATATCTATCCTGTTGTGTCAACAAAAAAGTAACTAATATATTT
GGTATAAAGAGTCCTGGAATTGGATGATGTATATAAGTGGAGAGAGTAAG
GATTTGCATTGAAAAAAGTAACAATGTATATGATGATCTTTTAATAAAAT
TTTGAATTTGCAATCTAGCAAAATATATTACTTATATAGAACTTTCTAAG
CATTTGCTTGCCATTGTAACTTTAAGATACCCTGTGATATACGTCTTTCT
CCAGTATGACATGTCTGCTTATACTCTCCACAGACCTCAGGCTAATTGCG
CAAATGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAAGAGTAATGGTTTTAA
TATTTATTTATATGCTATTCTGCGCATAATCTGTAGTTCTTATTTCTTTC
TGGTTTTTATCATCAGATATTTTGTAGGAAACACTAAAAAATTCTAATGG
ATTAATGCTTGGTTTTATCAAATTTTTCCTTTTTAAGGGCATTGGTAATC
TGATGTGAGGATAAAAGTATTTATGTTTCACTAACTCATAATGTATTTTG
AGTTTTAAAGTTGTTAAATTATCAAAGGTTCATGAAAGCATTTTTCACTC
TTTGGATCATANATACATTCACCCCCACCCCAAGAATTCAGATAATCAAT
AGTAAGATAGTTTGGGGACATATTTTATGAATACATCATAATTATTATTA
AACTGAAAATTTCAGAGAACATATTTTACATCAGGCAGATGTACCCCTAG
CTGTCTTAAGTACAATTGTAATATCAGTTCTTTTTTCAGTTTTTAATTTA
GTAAGAATTGGTCTTTGTAATGGACCCAAAAGACTTGCTTGATTATATTA
AAATGGCATGTGAATGTTCCACACAGACTGGCAAGCCCCACAAAGCTCCA
ACCTAGGTAACGTTTTAAAGGTGCAACACTCTCAAACGAGCACTTGAGTA
CTGAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_l23.g1 MSMg01no233_l23.g1 CHROMAT_FILE:
MSMg01no233_l23.g1 PHD_FILE: MSMg01no233_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:31 2005
         (326 letters)



>mm_chr4_28132645_28133369
          Length = 725

 Score =  569 bits (294), Expect = e-166
 Identities = 318/326 (97%), Gaps = 1/326 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcagataatcaatagtaagatagtttggggacatattttatgaatacatcataatt 60
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 201 gaattcagataatcaatagtaagatagtttggggacatattttttgtatacatcataatt 260

                                                                       
Query: 61  attattaaactgaaaatttcagagaacatattttacatcaggcagatgtacccctagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 attattaaactgaaaatttcagagaacatattttacatcaggcagatgtaccc-tagctg 319

                                                                       
Query: 121 tcttaagtacaattgtaatatcagttcttttttcagtttttaatttagtaagaattggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 tcttaagtacaattgtaatatcagttcttttttcagtttttaatttagtaagaattggtt 379

                                                                       
Query: 181 tttgtaatggacccaaaagacttgcttgattatattaaaatggcatgtgaatgttccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgtaatggacccaaaagacttgcttgattatattaaaatggcatgtgaatgttccaca 439

                                                                       
Query: 241 cagactggcaagccccacaaagctccaacctaggtaacgttttaaaggtgcaacactctc 300
           ||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct: 440 cagactggcaaaccccacaaagctccaaactaggtaacattttaaaggtgcaacaatctc 499

                                     
Query: 301 aaacgagcacttgagtactgaaattt 326
           ||||||||||||||||||||||||||
Sbjct: 500 aaacgagcacttgagtactgaaattt 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space:   226972
Effective search space used:   226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)