BAC Information

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BAC

Clone NameMSMg01-233P17
Chromosome4 (Build37)
Map Location 84,710,016 - 84,710,296
singlet/doubletsinglet
Overlap geneD530005L17Rik
Upstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, LOC622811
Downstream geneLOC100040303, Sh3gl2, A930009N24, LOC668052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233P17.T7 (MSMg01no233_p17.b1)MSMg01-233P17.TJ (MSMg01no233_p17.g1)
ACCAG400013AG400014
length756721
length of high quality
(start - end)
182 (122 - 303)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no233_p17.b1 PHD_FILE: MSMg01no233_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:49 2005CHROMAT_FILE: MSMg01no233_p17.g1 PHD_FILE: MSMg01no233_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGGGCCGCGGAATTCTTTAAT
TTTCCAAAACAAATACAAATACGGAGGTGGATGCTCACAGNCATCCATTG
GACATATCACCAGAAAACACAATGAAAGAGCTAGAGAAAGGACTCAAGGA
GCTGAAGGGGTTTGCAGCCCTATAGAAGGAACAACAATATGAACTAACCA
GTATCTCCAGAACTCCCTGGGACTAAACCACCAACCAAATATTCTCATGA
CTCTAGCTGCATATATAGCAGAGGATAGCCTAGTCGGTCATCAATGGAAG
GAGAGTGTCCTTAGTTCTTGCAAAGATTCTGTGCCCCAGNACAGGGGATT
GTTTGTTCCCCCCCCCCCCCCCGAGTGAAGGGGAGGGGAGGGAAGNNNNN
NNNNNNNNNCAAAAAAAAAAAAAAAAAAATTTTGTGGGGGGGGGGGGGGT
GTTTTTATTAGAATTAATTATTGTGTGGAAAATATATTTTATTTAGATAT
TTTTTTATGAAAGATGTATTAATAGTAATATATTATGAAGAGAANGTAGT
GTTTAAGTTTAAATTGATTAGAAAACGAGTATATTTATCTATTCTTTTTC
TACCGACTTACCCCTAACCCTCCATCATCCTCTCCCTTCTACCACACCCC
CCACATCATAACCCTTTTTTTTTTTTTTTTATTGTACGCACACCCCCACC
CACGTTATTTCTATTTTTTAATTTTCTATCACTCCTCTTACTTTCGTACT
TCCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGTTTGAGCTTTTGCTACAGAAAT
GACCATGTTTATTCACAAACAAATGTACAAGAATACTCTTTGCAATTCTA
TTTGTAGGAAATGTGAAGTGAAGCTTCTAAGTTCCAACAGTACAGTAGAC
AACAAAGCACTATTTATCCTATTCATAAGGCGGGAAGTCAATGAACTCTG
AGTGGCAGTGAACACAAAATGCCAGGGACCAGAGGCTTTGTCTCCTACTC
ATAAGTCTCCAGAGAGGAGACTTCATCAAAACTTGAAGGGAGCAAACTGA
TAATACTTGGTAGTGACTCCACCCCCCCAAGGGCTTGGTGAGGAAGTCTA
ATATTTTCTACACACACTGGCTATCATTTCATTATGTTCTGTTAAAATCG
TTTGTAGATTTATGAAAAGGGTTTACATATGCTTGTCATATCACTGAGAA
CTTGAGTGTCTTCCATTTACAAGTTCATTAGGCTGTATATGTATAGTGAT
AATAAACAACTCAGTCTATTAAGTAATATGGAGAAAAATAGCAACCACAA
AAAAGTTAAAAAAAATTTTTTTTTAAAGCTAGAGTCTTTCACTATATAAA
CCAGGCTAGGCTGGCCTCGTACTCCTAATCTCCTGCCTCAGCCACCAAAT
AGTAATGTCTGTAGAAACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_p17.g1 MSMg01no233_p17.g1 CHROMAT_FILE:
MSMg01no233_p17.g1 PHD_FILE: MSMg01no233_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:49 2005
         (284 letters)



>mm_chr4_84709816_84710499
          Length = 684

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtttgagcttttgctacagaaatgaccatgtttattcacaaacaaatgtacaagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgtttgagcttttgctacagaaatgaccatgtttattcacaaacaaatgtacaagaata 422

                                                                       
Query: 61  ctctttgcaattctatttgtaggaaatgtgaagtgaagcttctaagttccaacagtacag 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 ctctttgcaattctatttgtaggaaatatgaagtgaagcttctaagttccaacagtacag 362

                                                                       
Query: 121 tagacaacaaagcactatttatcctattcataaggcgggaagtcaatgaactctgagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tagacaacaaagcactatttatcctattcataaggcgggaagtcaatgaactctgagtgg 302

                                                                       
Query: 181 cagtgaacacaaaatgccagggaccagaggctttgtctcctactcataagtctccagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagtgaacacaaaatgccagggaccagaggctttgtctcctactcataagtctccagaga 242

                                                    
Query: 241 ggagacttcatcaaaacttgaagggagcaaactgataatac 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggagacttcatcaaaacttgaagggagcaaactgataatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)