Query= MSMg01no235_a21.b1 MSMg01no235_a21.b1 CHROMAT_FILE:
MSMg01no235_a21.b1 PHD_FILE: MSMg01no235_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:16 2005
(326 letters)
>mm_chr4_57673134_57673858
Length = 725
Score = 526 bits (272), Expect = e-154
Identities = 299/310 (96%), Gaps = 5/310 (1%)
Strand = Plus / Minus
Query: 5 gaattctctggacaccagcagtgctctgacatcaccctttccttttgtctttctccactt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattctctggacaccagcagtgctctgacatcaccctttccttttgtctttctccactt 405
Query: 65 gaggagaataagcctcgacactagaatgcccgagagtggcttttattctagtagagattc 124
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaggagaaaaagcat-gacactagaatgcccgagagtggcttttattctagtagagattc 346
Query: 125 tgtttccaaggagacagcatagctgagcagtaaggcaggagaggctgttggttggcagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgtttccaaggagacagcatagctgagcagtaaggcaggagaggctgttggttggcagga 286
Query: 185 agtagtcccatgattctcatggtttttagaaaggtcacatacaagccgccatttcttaat 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agtagtcccatgattctcgtggtttttagaaaggtcacatacaagccgccatttcttaat 226
Query: 245 actttgtaaaactgaatacctaccgtgctctgattttgtttgtttgtttgtttgtttgtt 304
|||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||
Sbjct: 225 actttgtaaaactgaacacct----tgctcggagtttgtttgtttgtttgtttgtttgtt 170
Query: 305 tttaaatctc 314
||||||||||
Sbjct: 169 tttaaatctc 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space: 226972
Effective search space used: 226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_a21.g1 MSMg01no235_a21.g1 CHROMAT_FILE:
MSMg01no235_a21.g1 PHD_FILE: MSMg01no235_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:16 2005
(284 letters)
>mm_chr4_57539531_57540214
Length = 684
Score = 503 bits (260), Expect = e-147
Identities = 278/284 (97%)
Strand = Plus / Plus
Query: 1 aggcagggctttgggattggctccttcttcttgagaaatagacagaactaaagagggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aggcagggctttgggattggctccttcttcttgagaaatagacagaaataaagagggtac 260
Query: 61 atttatctttatccagagaatgactgtgtatgtagtctattaggaaattgacaaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatctttatccagagaatgactgtgtatgtagtctattaggaaattgacaaaaaata 320
Query: 121 ggactaagtcgtggccatagcaagttctcagggtcacaactcagtttacatgcaaacgcc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactaagtcgtggccatagcaagttctcagggtcacaactcagtttacatgcaaacgcc 380
Query: 181 agtcacattctatatggtactgatgaacacttggacggcagcatttttaaatgttgtact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcacattctatatggtactgatgaacacttggacggcagcatttttaaatgttgtact 440
Query: 241 taggattactgcccctgacaatcttgttgatttagctttaaagg 284
||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 441 taggaaaacagcccctgacaatcttgttgatttagctttaaagg 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
