BAC Information

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BAC

Clone NameMSMg01-235E23
Chromosome4 (Build37)
Map Location 73,007,092 - 73,028,062
singlet/doubletdoublet
Overlap genenone
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235E23.T7 (MSMg01no235_e23.b1)MSMg01-235E23.TJ (MSMg01no235_e23.g1)
ACCAG400922AG400923
length708714
length of high quality
(start - end)		663 (46 - 708)638 (77 - 714)
definitionCHROMAT_FILE: MSMg01no235_e23.b1 PHD_FILE: MSMg01no235_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:36 2005CHROMAT_FILE: MSMg01no235_e23.g1 PHD_FILE: MSMg01no235_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,007,092 - 73,007,750)(73,027,425 - 73,028,062)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACCATATCTCTGAAGAATTTTAGTATATAAAAAGAGGCTTTCTT
TAATACAAATCATCCAAACCCATTTATCATAACACTCTCCAGTAATAAAA
ATGATACTGACCAAAAATTTGTGGTCCAAAGACTTTCCTTCTATGATTAG
AACTGTGGAGTAGAAGGTATATTGTATTATACTCATTTTAAAAGACAGTT
TTCAGTATGTGGTTTGGGCTGGCCTGGAACTCACTGAAATCTGCCCTCCT
CTTCCTCTTAAGTGCTGGGATTAAAGACATGCTCCACCATTCTTTCTTCA
TTATTAAAAATTTTATTCTCTATCTACAGAACATTTAATAACCACTCTAA
TTTAATAAGTAGTTATCAATGGAATAAATTGACTAGGTTGTGGTACTATC
TTTAACAACTATTTTATTGCTGAAGTATAAGTTCAGGGACTTAGAGTAGA
AGATGAAGTCATTGCAGTCTTATTCAGCCATATACCTGCTTTCTCTTTCC
TGGATGGCATCACATTCAATTCGGAGGTAAGCCACAAAATAGAGAAGAAC
TAATTCCTTTACCATATATTATTAGTAGGTCATGTTAGAGCAAATTGCAA
TACTTTTAAGAAGTTATGTGATAGAAATACAGTGATAAATGCCTTCCTTT
AAGGCTTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTAATAAATATGGGTTTATG
TTTTATAGATCATTGCTATAAGTGAAGTAAAAGCCCCATTTTCATTCAAA
ATATGAACTACAAGACCCATCAGAATAGATTGGCCTTGTGAGTAGGACTC
TGAGGAATTGAAATGATAACAGACAATAAGTTAATAGAATGCCTAAGGCA
ATTAAATTACAGAGAAAACAGGGTGGAGACAGGTTTCATTGAGGCTGGGA
CCAAGGGATTATAGAATTATAAAGACTTATTGTGCTGGTGGATGCGGCTG
CTAACTGGTTCTATCAGGGGCAAGCCTCCTGGGAGCACAGAGAGGCAACA
CTGCCTCTCAAACGTGGAGACTAGTTAGCACTACAGGGAGTCAGGAGTGA
ACCCAGATAATTAGAAATGAGGCCCTCATTTCATGTTCAACCTTCATTTG
CTCTCACATTCATTCTCTTTCTTTGATCTTTCCCCCTATTTCTGTGCACT
TTCTTTTTTATAAATTTATAGTATTCAAGTAAATTAAACATAAAAGTATG
TTTTTTGACTTGTCCTTTCAAGAATTGTATTAAACTAACATTTGCATTTT
GAATGATTTTTTTCAAAGCTGCAATTATTTATGCTTAGCTTACCATTTTC
CAAATGAATGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_e23.b1 MSMg01no235_e23.b1 CHROMAT_FILE:
MSMg01no235_e23.b1 PHD_FILE: MSMg01no235_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:36 2005
         (663 letters)



>mm_chr4_73006888_73007950
          Length = 1063

 Score = 1205 bits (623), Expect = 0.0
 Identities = 650/659 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaccatatctctgaagaattttagtatataaaaagaggctttctttaatacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccatatctctgaagaattttagtatataaaaagaggctttctttaatacaaa 264

                                                                       
Query: 65  tcatccaaacccatttatcataacactctccagtaataaaaatgatactgaccaaaaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatccaaacccatttatcataacactctccagtaataaaaatgatactgaccaaaaatt 324

                                                                       
Query: 125 tgtggtccaaagactttccttctatgattagaactgtggagtagaaggtatattgtatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtggtccaaagactttccttctatgattagaactgtggagtagaaggtatattgtatta 384

                                                                       
Query: 185 tactcattttaaaagacagttttcagtatgtggtttgggctggcctggaactcactgaaa 244
           ||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 tactcattttaaaagatggttttcaatatgtggtttgggctggcctggaactcactgaaa 444

                                                                       
Query: 245 tctgccctcctcttcctcttaagtgctgggattaaagacatgctccaccattctttcttc 304
           |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tctgccctcctcttcctcttgagtgctgggattaaagacatgctccgccattctttcttc 504

                                                                       
Query: 305 attattaaaaattttattctctatctacagaacatttaataaccactctaatttaataag 364
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 505 attattaaaaattttattctctatctacagagcatttaataaccactttaatttaataag 564

                                                                       
Query: 365 tagttatcaatggaataaattgactaggttgtggtactatctttaacaactattttattg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagttatcaatggaataaattgactaggttgtggtactatctttaacaactattttattg 624

                                                                       
Query: 425 ctgaagtataagttcagggacttagagtagaagatgaagtcattgcagtcttattcagcc 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgaagtataagttcaggaacttagagtagaagatgaagtcattgcagtcttattcagcc 684

                                                                       
Query: 485 atatacctgctttctctttcctggatggcatcacattcaattcggaggtaagccacaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atatacctgctttctctttcctggatggcatcacattcaattcggaggtaagccacaaaa 744

                                                                       
Query: 545 tagagaagaactaattcctttaccatatattattagtaggtcatgttagagcaaattgca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagagaagaactaattcctttaccatatattattagtaggtcatgttagagcaaattgca 804

                                                                      
Query: 605 atacttttaagaagttatgtgatagaaatacagtgataaatgccttcctttaaggcttt 663
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atacttttaagaaattatgtgatagaaatacagtgataaatgccttcctttaaggcttt 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no235_e23.g1 MSMg01no235_e23.g1 CHROMAT_FILE:
MSMg01no235_e23.g1 PHD_FILE: MSMg01no235_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:36 2005
         (638 letters)



>mm_chr4_73027225_73028262
          Length = 1038

 Score = 1226 bits (634), Expect = 0.0
 Identities = 637/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttaataaatatgggtttatgttttatagatcattgctataagtgaagtaaaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 agctttaataaatatgggtttatgttttatagatcattgctataagtgaagtaaaagccc 779

                                                                       
Query: 61  cattttcattcaaaatatgaactacaagacccatcagaatagattggccttgtgagtagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cattttcattcaaaatatgaactacaagacccatcagaatagattggccttgtgagtagg 719

                                                                       
Query: 121 actctgaggaattgaaatgataacagacaataagttaatagaatgcctaaggcaattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 actctgaggaattgaaatgataacagacaataagttaatagaatgcctaaggcaattaaa 659

                                                                       
Query: 181 ttacagagaaaacagggtggagacaggtttcattgaggctgggaccaagggattatagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttacagagaaaacagggtggagacaggtttcattgaggctgggaccaagggattatagaa 599

                                                                       
Query: 241 ttataaagacttattgtgctggtggatgcggctgctaactggttctatcaggggcaagcc 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 598 ttataaagacttattgtgctggtggacgcggctgctaactggttctatcaggggcaagcc 539

                                                                       
Query: 301 tcctgggagcacagagaggcaacactgcctctcaaacgtggagactagttagcactacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcctgggagcacagagaggcaacactgcctctcaaacgtggagactagttagcactacag 479

                                                                       
Query: 361 ggagtcaggagtgaacccagataattagaaatgaggccctcatttcatgttcaaccttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggagtcaggagtgaacccagataattagaaatgaggccctcatttcatgttcaaccttca 419

                                                                       
Query: 421 tttgctctcacattcattctctttctttgatctttccccctatttctgtgcactttcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttgctctcacattcattctctttctttgatctttccccctatttctgtgcactttcttt 359

                                                                       
Query: 481 tttataaatttatagtattcaagtaaattaaacataaaagtatgttttttgacttgtcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tttataaatttatagtattcaagtaaattaaacataaaagtatgttttttgacttgtcct 299

                                                                       
Query: 541 ttcaagaattgtattaaactaacatttgcattttgaatgatttttttcaaagctgcaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttcaagaattgtattaaactaacatttgcattttgaatgatttttttcaaagctgcaatt 239

                                                 
Query: 601 atttatgcttagcttaccattttccaaatgaatgtctt 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atttatgcttagcttaccattttccaaatgaatgtctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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