Query= MSMg01no235_g06.b1 MSMg01no235_g06.b1 CHROMAT_FILE:
MSMg01no235_g06.b1 PHD_FILE: MSMg01no235_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:42 2005
(676 letters)
>mm_chr4_41383796_41384870
Length = 1075
Score = 1125 bits (582), Expect = 0.0
Identities = 615/626 (98%), Gaps = 1/626 (0%)
Strand = Plus / Minus
Query: 5 gaattctatgtgttgttccaaaagcgaacaggaggagactggcttccaagcagctagaag 64
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattctatatgttgtttcaaaagcaaacaggaggagactggcttccaagcagctagaag 566
Query: 65 aaagttctctcaaagcccaaccccacagtgacacacttccttcaacaaggccacacctaa 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 aaagttctctcaaagcccaaccccacagtgatacacttccttcaacaaggccacacctaa 506
Query: 125 tagtgccactccctgggctaagcatattcagaataccacagtctcttaacattgcataaa 184
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 505 tagtgccactccctgggctaagcatattcagaataccacagtctc-taacattgcagaaa 447
Query: 185 accctaaaacaagacataacacaagagtcatagttgttaaataatttgaccatgtatgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 accctaaaacaagacataacacaagagtcatagttgttaaataatttgaccatgtatgtc 387
Query: 245 acctctgcttggtttcaatttcttttttcctttcctaagatttatttacatatatgagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acctctgcttggtttcaatttcttttttcctttcctaagatttatttacatatatgagca 327
Query: 305 ccctatttgcatgtatgcctgcatgacagaagaaagcatcagacagaagagggcatgaga 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccctatttgcgtgtatgcctgcatgacagaagaaagcatcagacagaagagggcatgaga 267
Query: 365 tccccttatggatggctgtgagccatcacatggttgctgggtattgatcagcacctgtag 424
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 266 tccccttatggatggctgtgagccatcacatagttgctgggtgttgatcagcacctgtag 207
Query: 425 atgagcagccatctccccagctctgcttctcagggtcctagcagagctggactggatgct 484
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 atgagcagccatctccacagctctgcttctcagggtcctagcagagctggactggatgct 147
Query: 485 ggtttatgcctcctaatctagtaatctgtattagtactctttggtttaccgagttattta 544
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggtttatgccccctaatctagtaatctgtattagtactctttggtttaccgagttattta 87
Query: 545 aaatgaagatctatcttatttgacatcttaaaataagaataccctctgcctttacatttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aaatgaagatctatcttatttgacatcttaaaataagaataccctctgcctttacatttt 27
Query: 605 tttcttttttttaagtatttattttt 630
||||||||||||||||||||||||||
Sbjct: 26 tttcttttttttaagtatttattttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space: 709290
Effective search space used: 709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_g06.g1 MSMg01no235_g06.g1 CHROMAT_FILE:
MSMg01no235_g06.g1 PHD_FILE: MSMg01no235_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:42 2005
(645 letters)
>mm_chr4_41342924_41343968
Length = 1045
Score = 1091 bits (564), Expect = 0.0
Identities = 631/668 (94%), Gaps = 26/668 (3%)
Strand = Plus / Plus
Query: 1 cccttaatctgcagctcagaaagcaaaatctccaaaaagccgcaggttgtgctagtccca 60
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 181 cccttaatctgcagctcagaaagcaaaacctccaaaatgccgcaggttgtgctagtccca 240
Query: 61 cacagggaaagatgatgtgtgttttcaccatcgcctaacttagcattactggcattctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacagggaaagatgatgtgtgttttcaccatcgcctaacttagcattactggcattctgt 300
Query: 121 tttgggtaaaattgtttatcatagaggctctaattattggagatattggataatatgtga 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 301 tttgggtaaaattgtttatcatagaggctctatttattggagatattggataatatgtga 360
Query: 181 ttttttacgcagtagataccagtagcaccccctcccccaaatgataatcaaaaatgttct 240
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 -tttttatgccgtagataccagtagcaccccctcccccaaatgataatcaaaaatgttct 419
Query: 241 tacttctgggggctggaaggatagctcagaggttaagagcactgctgcttttgcagaaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 tacttctgggggctggaaggatagctcagaggttaagagcactgctgcttttgcagaaga 479
Query: 301 cccccaggttcagttcccaggacccacatggtggctcacaaccctctgtaactccaattt 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cccccaggttaagttcccaggacccacatggtggctcacaaccctctgtaactccaattt 539
Query: 361 caggtaatattgtgctttctgacttctgacaccaggcacacatagggtacacacacatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caggtaatattgtgctttctgacttctgacaccaggcacacatagggtacacacacatac 599
Query: 421 atcatgcatacggacaaaatactgatatacatatcagtat-------------------- 460
||||||||||||||||||||||||||||| |||| | |||
Sbjct: 600 atcatgcatacggacaaaatactgatatatatat-a-tatatatatatatattttaattt 657
Query: 461 ---tttaatttagattaatttatttattaatctaaaacatcttcaaatgtttttaattct 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agatttaatttagattaatttatttattaatctaaaacatcttcaaatgtttttaattct 717
Query: 518 gtaagagactaactataagtagaaatgggagtagtgctgacagatacccctcagaaagaa 577
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 718 gtaagatactaactataagtagaaatgggaatagtgctgacagatacccctcagaaagaa 777
Query: 578 tcctgaccaagcagttaattagtgggtgttagctttaagagcagtgagatagctcagtgg 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gcctgaccaagcagttaattagtgggtgttagctttaagagcagtgagatagctcagtgg 837
Query: 638 gtaaaggc 645
||||||||
Sbjct: 838 gtaaaggc 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
