BAC Information

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BAC

Clone NameMSMg01-235G13
Chromosome4 (Build37)
Map Location 76,577,455 - 76,577,767
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235G13.T7 (MSMg01no235_g13.b1)MSMg01-235G13.TJ (MSMg01no235_g13.g1)
ACCAG400991AG400992
length726730
length of high quality
(start - end)
317 (45 - 361)350 (381 - 730)
definitionCHROMAT_FILE: MSMg01no235_g13.b1 PHD_FILE: MSMg01no235_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:44 2005CHROMAT_FILE: MSMg01no235_g13.g1 PHD_FILE: MSMg01no235_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAACATTCTTTTCTGCATTAAATAACTATGTCTACCTAGTGCACTT
AGAGAATTCCTCTCCTGTGCCACTGCCCACTTCTTTCCCGTGTCCTGTCA
ATTACTGAATATAATCATCATTAGAAAGTGCAGTGACTTCACAGAAGCCC
AGCACACACAACAGGGGCTGAGCTACATCCATAGCAATCAGTTGGTTTTG
ATATGCCCAGCATGGTAGCCACTTGTCCTGGAGAGACTGCTGGGAGAGTC
TGGGAAATGAATGTGACCTTTATCTGTATGGAGCACAGATTGCCCATCCC
TGTTCTTCCTGTCGATGCCACGCATAAAGGCTATGTAAATTATGAGGGTG
TACCTGCTCTGTGGAACACATTCAAACATGACTTATTAGTCTGTTCAAAG
GTAGAGGTGGGGAGATTCACCAAAAGCTCCTATAGAGCACCATATACAAG
GAGAATGCTTGCTAAAAGGCACACTGCAAGGCAGAGAGATCATGAAAGTA
AGTTTGTTTAGTCACTGTTTTATTTTTCTTTCTGTGGGACATTACAGGCC
AATTTGGCAGATGGAGAGGGGACCAGAGAGTAATGAGTTCCAGAAACCAC
AGGTAAACATGAAATTTTGCTTGTTTGTCATCTTCACACACTCACAGTGT
GGGTGGCCAGAGGATATATTCTTTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCA
AATGAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGTCGAGGATATGAAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTTCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATATTTCTCCTGCCCCCACCTCCCGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTACTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_g13.b1 MSMg01no235_g13.b1 CHROMAT_FILE:
MSMg01no235_g13.b1 PHD_FILE: MSMg01no235_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:44 2005
         (317 letters)



>mm_chr4_76577251_76577967
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaacattcttttctgcattaaataactatgtctacctagtgcacttagagaatt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctaacattcttttctgcattaaataactatgtctacctagtgcacttggagaatt 264

                                                                       
Query: 65  cctctcctgtgccactgcccacttctttcccgtgtcctgtcaattactgaatataatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctctcctgtgccactgcccacttctttcccgtgtcctgtcaattactgaatataatcat 324

                                                                       
Query: 125 cattagaaagtgcagtgacttcacagaagcccagcacacacaacaggggctgagctacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattagaaagtgcagtgacttcacagaagcccagcacacacaacaggggctgagctacat 384

                                                                       
Query: 185 ccatagcaatcagttggttttgatatgcccagcatggtagccacttgtcctggagagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatagcaatcagttggttttgatatgcccagcatggtagccacttgtcctggagagact 444

                                                                       
Query: 245 gctgggagagtctgggaaatgaatgtgacctttatctgtatggagcacagattgcccatc 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctgagagagtctgggaaatgaatgtgacctttatctgtatggagcacagattgcccatc 504

                        
Query: 305 cctgttcttcctg 317
           |||||||||||||
Sbjct: 505 cctgttcttcctg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)