TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGCTCATTACATAATAAATCTTACAGGAAGTTGAGAATGGCGGC
CCCTCAGAGCCCCAGACTGCCATGCGGCTTCTTTGCATCCTAGTGCTGTG
TGCTAGCTTATCCTTCTAAGGCCTCCCCTCTGCTTTTCCTTCTCATTTTT
CTACACAAGGTTGCTTCAAAAGGGAACTAGACTCCTAGAAATCAAGCCAG
GGAATAACCTGACTATTTCTTGCTGAGAAGTAATAATTATGGCCCTGGAA
GGATGCAATCTGCATACATTATTGCAAGTTATGCCAACAGAATGTCAACA
TTTGTGTCAGGAGGAGTCTCGAGCAGCAATTACTCTCTCGGTCTTGGTCT
GGCGTTCTGAGCCAGAGTTGGCAATGCTAATTGCAGGGGAGGAAAACTAG
AGGGGAGGAGGTTACATAAGGGGAAACAGAAGAGGAACCACAAACTTGAA
GGTCAGAAAGCAGTGGGTACAGACAACAATTGGGGACCATCTGGATTATA
GGAATCATTGGAATGGAACATTTTATGATGGCCAGGAGGACTAGATGGCT
TCATCAATTCTTGGATTTTTTCCCCTTTTTCATTTTANATAGCATCAGCA
TTTAAATTTTTCAAATTTCTTTTTTGAAGAAAGCAGGAGCAACAGAATAT
ATACCAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAGTTCTGTACCCCATTT
TAATGGGGATATTTGATTTTCTGGACTAAAGCTTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAGATCCTTTC
CAAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTAA
AGAAGCTTTGCAATTTTATGTGGTCCCATTTGTCAATTCTCAATCTTACA
GCACAAGCCATTGCTGTTCTGTTCAGCAATTTTCCCTCTGTGGCCATATC
TTTGAGGCTTTTCCCCACTTTCTCTATAAGTTTCAGTCTCTGGTTTTATG
TGGAGTTCCTTGATCCACTTAGACTTGAACTTTGTACAATGAGATAAGAA
TGGATCAATCCTCATTCTTTCTCATGATAACTACCAATTGAGCCAGCACC
ATTTGTTGAAAATGCTGTTTTTTTTCCCCCACTGGATGTTTTAATTCCCT
TTGTCAAAGCTCAAGTGACCATAGGTGGGAGGGTTCATTTTTGGCTCTTC
AATTCTATTCCATTGATCTACCTGTCTGTCATTGTACCAGTACCATGCAG
TTTTCTTGTTTGTTTGTTTGGATGCTTGTTTGTTTGTTTGATTGTTTTCA
ATCCCA

Query= MSMg01no236_h04.b1 MSMg01no236_h04.b1 CHROMAT_FILE:
MSMg01no236_h04.b1 PHD_FILE: MSMg01no236_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:01 2005
         (588 letters)



>mm_chr4_69056194_69057183
          Length = 990

 Score = 1098 bits (568), Expect = 0.0
 Identities = 581/586 (99%), Gaps = 2/586 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgctcattacataataaatcttacaggaagttgagaatggcggcccctcaga 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgctcaagaaataataaatcttacaggaagttgagaatggcggcccctcaga 264

                                                                       
Query: 65  gccccagactgccatgcggcttctttgcatcctagtgctgtgtgctagcttatccttcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccccagactgccatgcggcttctttgcatcctagtgctgtgtgctagcttatccttcta 324

                                                                       
Query: 125 aggcctcccctctgcttttccttctcatttttctacacaaggttgcttcaaaagggaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcctcccctctgcttttccttctcatttttctacacaaggttgcttcaaaagggaact 384

                                                                       
Query: 185 agactcctagaaatcaagccagggaataacctgactatttcttgctgagaagtaataatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agactcctagaaatcaagccagggaataacctgactatttcttgctgagaagtaataatt 444

                                                                       
Query: 245 atggccctggaaggatgcaatctgcatacattattgcaagttatgccaacagaatgtcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggccctggaaggatgcaatctgcatacattattgcaagttatgccaacagaatgtcaa 504

                                                                       
Query: 305 catttgtgtcaggaggagtctcgagcagcaattactctctcggtcttggtctggcgttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catttgtgtcaggaggagtctcgagcagcaattactctctcggtcttggtctggcgttct 564

                                                                       
Query: 365 gagccagagttggcaatgctaattgcaggggaggaaaactagaggggaggaggttacata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagccagagttggcaatgctaattgcaggggaggaaaactagaggggaggaggttacata 624

                                                                       
Query: 425 aggggaaacagaagaggaaccacaaacttgaaggtcagaaagcagtgggtacagacaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggggaaacagaagaggaaccacaaacttgaaggtcagaaagcagtgggtacagacaaca 684

                                                                       
Query: 485 attggggaccatctggattataggaatcattggaatggaacattttatgatggccaggag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attggggaccatctggattataggaatcattggaatggaacattttatgatggccaggag 744

                                                         
Query: 545 gactagatggcttcatcaattcttggatttttt--cccctttttca 588
           |||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 745 gactagatggcttcatcaattcttggattttttttcccctttttca 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space:   566440
Effective search space used:   566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)