Query= MSMg01no236_j13.b1 MSMg01no236_j13.b1 CHROMAT_FILE:
MSMg01no236_j13.b1 PHD_FILE: MSMg01no236_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:12 2005
(576 letters)
>mm_chr4_52005207_52006182
Length = 976
Score = 1044 bits (540), Expect = 0.0
Identities = 566/576 (98%), Gaps = 4/576 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaccaatgtcaccgccagtttccaagaaattcagtacaaactgcatagtagga 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattccaccaatgccacagccagtttccaagaaattcagtacaaactgcatagtagga 261
Query: 64 tccagagagttccacccgcatcacagatgaatgatcaagctagtcttgcattgatccagc 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tccagagagttccacctgcatcacagatgaatgatcaagctagtcttgcattgatccagc 321
Query: 124 tggcaagttaagagtaactataatatgccaaacgtcagctgcccaggaaatatagccaac 183
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 tggcaagttaagagtaactataatatgccaaacgtcagctgcctaggaaatatagccaat 381
Query: 184 ccttgggtgacagtttcctgttcacagtcacagactgtgatacctccctgtattactcaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccttgggtgacagtttcctgttcacagtcacagactgtgatacctccctgtattactcaa 441
Query: 244 ctgtgaaatagcatcagctatcccttctacaaacaaactctaaatgtcagacttagctta 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 ctgtgaaatagcatcagctatcccttctacaaacaaac-ctaaatgtcagacttagctta 500
Query: 304 gaagtgccctcttctagtcatgttcctttctatgagcatactgatctgcctgttttgctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagtgccctcttctagtcatgttcctttctatgagcatactgatctgcctgttttgctt 560
Query: 364 atctttaaaacttgtac---actgcttgccaattactaaatagttcttatattttaatta 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctttaaaacttgtagttaactgcttgccaattactaaatagttcttatattttaatta 620
Query: 421 atttattgatttattgtttttcatactttctgactaatgtcccctccctctattccaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttattgatttattgtttttcatactttctgactaatgtcccctccctctattccaccc 680
Query: 481 agtcccactccatctcctctagcatccaaatacaccctcctctgttttgcttcagaaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtcccactccatctcctctagcatccaaatacaccctcctctgttttgcttcagaaaag 740
Query: 541 accaggccttccaagaatatccatagaacgtggcat 576
||||||||||||||||||||||||||||||||||||
Sbjct: 741 accaggccttccaagaatatccatagaacgtggcat 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_j13.g1 MSMg01no236_j13.g1 CHROMAT_FILE:
MSMg01no236_j13.g1 PHD_FILE: MSMg01no236_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:12 2005
(137 letters)
>mm_chr4_52185040_52185576
Length = 537
Score = 250 bits (129), Expect = 3e-71
Identities = 135/137 (98%)
Strand = Plus / Minus
Query: 1 atatctgatggagctgttaaaggaaagtataagaacctaaaagatgcctgaactgtatgg 60
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 337 atatctgatggagctgttaaaggaaagtataagaatctaaaagatgtctgaactgtatgg 278
Query: 61 aaaccttgaaggaaaagtgaacgttgttagttgaaatttcatgaaaattcaaacaatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaaccttgaaggaaaagtgaacgttgttagttgaaatttcatgaaaattcaaacaatgtt 218
Query: 121 ttgcaattcaaaaatac 137
|||||||||||||||||
Sbjct: 217 ttgcaattcaaaaatac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space: 68241
Effective search space used: 68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
