CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGA
ATTCATTTAACCTTTCCATGCTTAATAATAGGCTTCTTTGATGCACGTGT
ATTCGTGAGTATATGGGCTCCTGCCTGCAGTCATGTATCATCTGCACATG
GAGGCCACAGGTCATCTCAGATGTCATTCCTCAAGGACTATTTGTCTTTG
TCTTTGATTTGGGCTTTGGGATATAGTGTATTACTGGCCTGGCACACTCA
CCAAACAGCACAGGCTGGCCGGCCAAAGAACCCTCAAGTTCTACCTGTGT
CTGCCTCCCTAGTACTAGGATCACTAGCATGTGTCACCATACCTGGTTTT
GGGGGGTTTTGAGGATCAAACTAAAGCCATCATGCTTGTATTAGCCTCCA
CGGTAGATCCTTTTAAAAAAAACAATAGCGCTAATAGGCAGACTAAGACA
TACTGTTTGGTATAGACGGTAGTCACAACATCAGTGCAAGAACTCAGGGG
ACTGACTTTGTTTCCCCTTTTCACTCATCCAGCCAGTCCTCCAGACTTAA
AGCTCCTACTTTGGAAATGTTTCTAGAGATTTCTGAAATCTCTCTACCCT
AGTACAAAAGCTTGGGTCTTGCTCATGTTGAATTTGAATGCTAAATCGGC
TCTAGCCCTCATCCTCTTTCTTCTGAAATTAGTATTCAAAGTTGTCTTTC
TAATATACATGTTTATCAAATGATGTTTCTACTTTAAACCCCTCCCCCGA
CCTTGGA

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
GTCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTTTGGTGCATATCTCCCCCCCAGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAAAATTAATTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTATTCAGCTATTAAAACGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGC
TAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGC
CCCTCC

Query= MSMg01no236_m23.b1 MSMg01no236_m23.b1 CHROMAT_FILE:
MSMg01no236_m23.b1 PHD_FILE: MSMg01no236_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:28 2005
         (571 letters)



>mm_chr4_87070346_87071319
          Length = 974

 Score =  849 bits (439), Expect = 0.0
 Identities = 450/455 (98%), Gaps = 3/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 120 tttgtctttgtctttgatttgggctttgggatatagtgtattactggcctggcacactca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 tttgtctttgtctttgatttgggctttgggatatagtgtattactggcctggcacactca 915

                                                                       
Query: 180 ccaaacagcacaggctggccggccaaagaaccctcaagttctacctgtgtctgcctccct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ccaaacagcacaggctggccggccaaagaaccctcaagttctacctgtgtctgcctccct 855

                                                                       
Query: 240 agtactaggatcactagcatgtgtcaccatacctggttttggggggttttgaggatcaaa 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 agtactaggatcacaagcatgtgtcaccatacctggttttggggggttttgaggatcaaa 795

                                                                       
Query: 300 ctaaagccatcatgcttgtattagcctccacggtagatccttttaaaaaaaa---caata 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 794 ctaaagccatcatgcttgtattagcctccacggtagatccttttaaaaaaaaaaacaata 735

                                                                       
Query: 357 gcgctaataggcagactaagacatactgtttggtatagacggtagtcacaacatcagtgc 416
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 734 gcgctaataggcagactaagacatactgtttggtatagactgtagtcacaacatcagtgc 675

                                                                       
Query: 417 aagaactcaggggactgactttgtttccccttttcactcatccagccagtcctccagact 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aagaactcaggggactgactttgtttccccttttcactcatccagccagtcctccagact 615

                                                                       
Query: 477 taaagctcctactttggaaatgtttctagagatttctgaaatctctctaccctagtacaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taaagctcctactttggaaatgtttctagagatttctgaaatctctctaccctagtacaa 555

                                              
Query: 537 aagcttgggtcttgctcatgttgaatttgaatgct 571
           |||||||||||||||||||||||||||||||||||
Sbjct: 554 aagcttgggtcttgctcatgttgaatttgaatgct 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 974
Length adjustment: 10
Effective length of query: 561
Effective length of database: 964
Effective search space:   540804
Effective search space used:   540804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)