Query= MSMg01no236_n04.b1 MSMg01no236_n04.b1 CHROMAT_FILE:
MSMg01no236_n04.b1 PHD_FILE: MSMg01no236_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:29 2005
(278 letters)
>mm_chr4_122836292_122836969
Length = 678
Score = 470 bits (243), Expect = e-137
Identities = 267/275 (97%), Gaps = 2/275 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatataaat-atttcataactgtatctctaagcccataaaaggtttgggttcca 63
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatataaataattgc-taactgtatctctaagcccataaaaggtttgggttcca 263
Query: 64 tagggttgagattgctgcccatcgagaatggtagctggtggcgctgttatctctgagaag 123
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tagggttgagattgctggggatcgagaatggtagctggtggcgttgttatctctgagaag 323
Query: 124 actgatggacaaactggcttccgtggctgctgcaggagatgctactattgccagaaatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgatggacaaactggcttccgtggctgctgcaggagatgctactattgccagaaatta 383
Query: 184 gattagaagcttgtgtgtgtgtgcgtgtgtgttggttttttgagacagggtttctctgtg 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatcagaagcttgtgtgtgtgtgcgtgtgtgttggttttttgagacagggtttctctgtg 443
Query: 244 cagccctggctatcctggaattcactctgtagacc 278
|||||||||||||||||||||||||||||||||||
Sbjct: 444 cagccctggctatcctggaattcactctgtagacc 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no236_n04.g1 MSMg01no236_n04.g1 CHROMAT_FILE:
MSMg01no236_n04.g1 PHD_FILE: MSMg01no236_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:29 2005
(291 letters)
>mm_chr4_122940419_122941112
Length = 694
Score = 462 bits (239), Expect = e-135
Identities = 273/295 (92%), Gaps = 19/295 (6%)
Strand = Plus / Minus
Query: 1 taggacagcaagactacacagagaaaccctgcctcgaaaaaccaaaagccaccccaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 416 taggacagcaagactacacagagaaaccctgcctcgaaaaaccaaaagccaaaccaaact 357
Query: 61 caaccaaaccaaccaaccgaacaaaaaagcaatctgtaggtgctgtg----atatatata 116
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 356 caaccaaaccaaccaaccgaacaaaaaagcaatctgtaggtgctgtgatatatatatata 297
Query: 117 tatatatgcaccacacacactcgaaataagtttttctgatttttgttttttgttttttaa 176
||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 296 tatatatgcaccacacacactcgaaataagttttt-tga--------------tttttaa 252
Query: 177 gagaagaaaaggcctcacgtagcccaggcttacctgtagcttgttatgtagctgaggtga 236
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gagaagaaaaggcctcatgtagcccaggcttacctgtagcttgttatgtagctgaggtga 192
Query: 237 ccatgaacttcaaatcttccttcctctatcttgcaagtgtggagtcttcaggtgt 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccatgaacttcaaatcttccttcctctatcttgcaagtgtggagtcttcaggtgt 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 694
Length adjustment: 9
Effective length of query: 282
Effective length of database: 685
Effective search space: 193170
Effective search space used: 193170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
