BAC Information

Click to search

BAC

Clone NameMSMg01-236N08
Chromosome4 (Build37)
Map Location 49,215,813 - 49,216,010
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236N08.T7 (MSMg01no236_n08.b1)MSMg01-236N08.TJ (MSMg01no236_n08.g1)
ACCAG401970AG401971
length773799
length of high quality
(start - end)
203 (183 - 385)198 (182 - 379)
definitionCHROMAT_FILE: MSMg01no236_n08.b1 PHD_FILE: MSMg01no236_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:30 2005CHROMAT_FILE: MSMg01no236_n08.g1 PHD_FILE: MSMg01no236_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTACCTCCATTCCTTTTCCCCCTTCCTAAAATTCAACCCCTNNNNNN
NNTTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCGGTGGAATTGCACTGAGGACTTTCAACTTCCTTTATCTTT
ACCAAACTCCACTCTAGTAAAGTTTGATCTCTGGCTTTGCCACAGGAAAG
AATTTCAGGGTGAGCCAGTATGAAGTAAAGTTAAAGTTTATGTTAAAAAA
AAACTTTAACATTTGTATTTTTGGAATCAATTCTCTCCATGTGGGTTCCA
AGAATGGAACTAAGATCATTTGGCTTGACAGCAAGCATCTTTGCTCACTG
ATCCATCTCATCAGTCCTTAAAAGATTCTTTATATCAATTTAAAAACAGG
TTACTAGAAAGAGAGGTTTTTTATATCCCACCCCCCACCTACTTAAGATC
TTGTGATTTTTCAAAAAGAGTCAGACTACATGTGAACATTATCTGCGTAT
GCTATTATTGGTGGCTTCTGACTTTACATCCCAAGGGTTTATTTCGGTTG
TTCCATCCCACAATCAGCCACTAAACCTAGATACTATTGCTTATACCATT
ACAGATTTTGCTGAAGGTATTCCGACATAGATGTCCTCTTATGAGGTTAT
GTCAATGCCTGGTAAATATATAAGTGGATGCTCACAGCCATCTATTTATT
CGATGGTAAAAAGAGCCTTACCTGGATAAGCTAGAGTTAGTATCCAAGGT
CTTTGATTGGGTCTGTATATTAT
CCCCCTTTTCTTTTTTCCCTTCTATTCAACCTTCTTTTCCCTCTTCTTCC
TTTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTCATTTGTTTTTTTG
ATTGCTTGTTGCTCATGTAATATATATCGCCCATGCAACCAGGTTTGGTA
TGGGGAAACTTTTCTGAGGGTTTTGTTCTGTGGGGATGGGGTAGAGAATT
GAGCATAATTTACTTTAATACCATTGATTCGGTCTTCAAAAACCATTCCT
ATCAGCTGTGTGAACAGCACCCATTGCTCCACTGGGTTCAAAATTTGCGG
ATATCCAACTTGCACCTCTTTTCTACTCTCATAGATGGGAAGCATTTCCA
TGTTGTTTGTCTTCATTTTTTTAGCCCCCACCACCCAATAAGCTTGTGAA
TATTTTCATTTGTTCATTGGCGACCCCAAATTTCTCCATACAGCTCATGT
ATTATTATACTTTGTCTACATTGTTATTCTTTTATAACAATCCTGCTCCT
TCTTTTGTTTCTACGTTGATTTATATCCTTTTACATTTTTATTCTGCAGT
TGATCAATTTGGATGATTATAATACGCCCAACAAATTTTTTGTATTTTAT
TGGTCTTTTGAAATAAAAATACTCCACATTATAATTTGTTTATTGTCTTT
TTTGAAAATTGTGCATTATCATATAAATTTTTATATTAATTTTATAACTC
AAAATCCACTAACTTTTGTTATTTATAAAATTCTTAATACACCCCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_n08.g1 MSMg01no236_n08.g1 CHROMAT_FILE:
MSMg01no236_n08.g1 PHD_FILE: MSMg01no236_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:30 2005
         (198 letters)



>mm_chr4_49215613_49216210
          Length = 598

 Score =  329 bits (170), Expect = 8e-95
 Identities = 191/198 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcaaccaggtttggtatggggaaacttttctgagggttttgttctgtggggatgggg 60
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 catgcaaccaggtttgggatggggaaacttttcttagggttttgttctgtggggatgggg 260

                                                                       
Query: 61  tagagaattgagcataatttactttaataccattgattcggtcttcaaaaaccattccta 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 261 tagagaattgagcataatttactttaataccattgattcgctcttcaaaaactattccta 320

                                                                       
Query: 121 tcagctgtgtgaacagcacccattgctccactgggttcaaaatttgcggatatccaactt 180
            ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 321 ccagctgtgtgaacagcacccattgctccactgggttcaaaatttgtggctatccaactt 380

                             
Query: 181 gcacctcttttctactct 198
           ||||||||||||||||||
Sbjct: 381 gcacctcttttctactct 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)