Query= MSMg01no236_n22.b1 MSMg01no236_n22.b1 CHROMAT_FILE:
MSMg01no236_n22.b1 PHD_FILE: MSMg01no236_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:32 2005
(571 letters)
>mm_chr4_15759965_15760933
Length = 969
Score = 944 bits (488), Expect = 0.0
Identities = 551/572 (96%), Gaps = 4/572 (0%)
Strand = Plus / Plus
Query: 1 ataagtataccatcatcagtaaccagtgaaatgatttaatatgcttaagccattttaata 60
|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 201 ataagtatgccatcatcagtaaccagtgaaatgatttaatatgctaaaggaattttaata 260
Query: 61 aggaatagtatttccgttgtattctatagaacctgccttaccactagatacaataaccat 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaatagtatttcagttgtattctatagaacctgccttaccactagatacaataaccat 320
Query: 121 gaacacgttcaacttccactgaaatcaattatttttcatgacatagtctcaacagcacct 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacac-ttcaacttccactgaaatcaattatttttcatgacatagtctcaacagcacct 379
Query: 181 tcaagcatgttcaattataagtcctacacaataatttttacaaacccagatccatggaca 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaagaatgttcaattataagtcctacacaataatttttacaaacccagatccatggaca 439
Query: 241 aagaatagtatacatttctgatccataaaaattagtatataaaaacttatcttctttaaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 aagaatagtaaacatttctgatccataaaaattagtatataaaaacttagcttctttaaa 499
Query: 301 ttattctctagtgacttgaattgacaaataaatgatcgggtcataaat-atctgtatgtg 359
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 500 ttattctctagtgacttgaaatgacaaataaatgatcgggtcataa-tgatctgtatgtg 558
Query: 360 aggccagcaaacttatttgtaatttcacagaaatatagagagttagtatgactcagacaa 419
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 559 aggtcagcaaacttatttgtaatttaacagaaatatagagagttagtatgactcagacaa 618
Query: 420 taaaattcaaaaaaaaaagtccacataatgaaatgtagagaataaaagatgaggagagaa 479
||||||| |||||||| |||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 619 taaaattttaaaaaaaa-gtccacataatgaaatatagaaaataaaagataaggagagaa 677
Query: 480 gattacagtgaataaaatataactataacagaaagacagctcagattagatggtactcaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gattacagtgaataaaatataactataacagaaagacagctcagattagatggtactcaa 737
Query: 540 acacacacacacacacacacacacacacacac 571
||||||||||||||||||||||||||||||||
Sbjct: 738 acacacacacacacacacacacacacacacac 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 969
Length adjustment: 10
Effective length of query: 561
Effective length of database: 959
Effective search space: 537999
Effective search space used: 537999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_n22.g1 MSMg01no236_n22.g1 CHROMAT_FILE:
MSMg01no236_n22.g1 PHD_FILE: MSMg01no236_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:32 2005
(289 letters)
>mm_chr4_15929871_15930559
Length = 689
Score = 513 bits (265), Expect = e-150
Identities = 283/289 (97%)
Strand = Plus / Minus
Query: 1 ctgaatgaaactgatgatgttgttcgttattaatctgtcacatcagtttttattttgcct 60
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct: 489 ctgaatgaaactgatgatgttgtttgatattaatctgtcacatcggtttttattttgcct 430
Query: 61 ggaatagtttcccttcctaatgacacactcctcaaaacccacttgcatctttgaagaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaatagtttcccttcctaatgacacactcctcaaaacccacttgcatctttgaagaagt 370
Query: 121 accatttcacatacactgggacaatacttgtgtcacatctacccctttctgaatactgct 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 accatttcacatacacttggacaatacttgtgtcacatctacccctttctgaatactgct 310
Query: 181 gtcccagtgacagcatgcttaatagatcacatggtcaaggcaagactggcatatatgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtcccagtgacagcatgcttaatagatcacatggtcaaggcaagactggcatatatgaca 250
Query: 241 ccacgtgttaaaaaatgacataggtaaatgtactcatctcttactcaga 289
||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 249 ccacgtgttaaaaaatggcataggtaaatgtactcatttcttactcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
