BAC Information

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BAC

Clone NameMSMg01-236O23
Chromosome4 (Build37)
Map Location 137,425,407 - 137,583,011
singlet/doubletdoublet
Overlap geneEce1, LOC100040558, Eif4g3
Upstream geneC1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2
Downstream geneHp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236O23.T7 (MSMg01no236_o23.b1)MSMg01-236O23.TJ (MSMg01no236_o23.g1)
ACCAG402043AG402044
length735744
length of high quality
(start - end)
520 (65 - 584)242 (124 - 365)
definitionCHROMAT_FILE: MSMg01no236_o23.b1 PHD_FILE: MSMg01no236_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:37 2005CHROMAT_FILE: MSMg01no236_o23.g1 PHD_FILE: MSMg01no236_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,425,407 - 137,425,926)(137,582,774 - 137,583,011)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAAG
CTCTTCCCGGCAGTGGTGGGGCACACCTTTAATCCCAGGCAGAGGCAGGC
GGATTTCTGATTTCGCCGCCAGCCTCGTCTACAGAGTGAGTTCCAGGACA
GCCAGGGCTGCACAGAGAAACCCTTTGGGGGGTGGGGGGAGAATCCCCAA
GCTCCATGCACTGTTTGGTTGTGGGTGTCTGTACTGTGTCAACTCTTAAC
ACACTCGAGCTTCTTGGGGCCTGGTTCCCATCTTCTCCTGATGCCTGTTC
CAGAATCTGCTCTTTGTTAAGTTGTGTCCTGTTGTGTAGATAAAGATGTA
AATATCTGTGACTAACATTTGGGCTGCTCTCCGTTTGGGGCCAACGTGAC
ATTCTTGATCGTGTCCATACGTGTCTGACTTATGTAGCTGCCACACCGTC
CTCTGACGTCTGTCGGTGTTCCGTTTCAGAGCAGATCATCCCCCCACCCC
CCACCCCCAGCCCAGTGCTTGGCCTAGAACAGGCTTCCAGGGCCCTTTTT
GTCTCAGCCTGGCTCCTCTTTTCGAGCCCCGCCCCCTGCCCTCGGCGGCT
GGCAAACCCTGAGCTGCATTCTGCCAGATTTGGATTCCACTGTACCATGG
TGTTCCTCATGTAAGGGGAGGGGGATCTGTGCCCTGGAGGGGACCCCCTC
ATCCTCCGCGAAGGCCTGCCTTTGAATGACTTTAG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAAAATCCTGATCCTTCTTGGGATGGTTGTAACTC
AGTTCTTGCAATAGCTTTTGCCACAGATTAGTCTGAGTAAAAGCAAAGGT
GATGGGTAGATTTCTGTCTCGGACCCATAGAACAGAACAGAAAACCGTGT
CCACCCTAAAGGCAAAGAAGCCTGGAGTGCCCCAAGCTTCCTTAGCCATC
AGGGCTGAAGCTGCAAGAAACAAAGCGACAGGAGCCCAAGGAGGAAGCAG
TGGCAGCCAGGCCAAGAAGCCTCCTGATCCACCGAGTCCTCCCTTGGGTT
GCTCTCGTTTGTCTATTGTTGCGATCTTTGTCCTGGGGTTTGCGTGGTTT
GGTTTTTTCTTTAGGGGGGGTGGAAAAGAAAAAAAATCTTCCCTTTGTCT
GTACATTAAATTTCCTTATTATTATCCCATTTTTATTTTCTTTACCTATT
TACCTTTAATACATCTATCTTTTCTTTTTTCTCTTTTCTACCTAACTGCC
CTTTGCTTCCCAGCCTTCTTCCACTAACTCTCTTTATCCATTCTCTATTG
TCTTCCCTTTTTAAAACTTCCCTACTTTTTCCCCACCTCTTTCCCCTTCT
TTTTTTCTTCCTTCTCCCTTATTTTCTCTTCTTCTCCCCTTTTTTTTCCC
CCTCCTTTTATCTCTTATTCACCCCCCCTATCCCATCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_o23.b1 MSMg01no236_o23.b1 CHROMAT_FILE:
MSMg01no236_o23.b1 PHD_FILE: MSMg01no236_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:37 2005
         (520 letters)



>mm_chr4_137425207_137426126
          Length = 920

 Score =  982 bits (508), Expect = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtggggcacacctttaatcccaggcagaggcaggcggatttctgatttcgccgccagcc 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||
Sbjct: 201 ggtggggcacacctttaatcccaggcagaggcaggcggatttctgagttcgaggccagcc 260

                                                                       
Query: 61  tcgtctacagagtgagttccaggacagccagggctgcacagagaaaccctttggggggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgtctacagagtgagttccaggacagccagggctgcacagagaaaccctttggggggtg 320

                                                                       
Query: 121 gggggagaatccccaagctccatgcactgtttggttgtgggtgtctgtactgtgtcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggagaatccccaagctccatgcactgtttggttgtgggtgtctgtactgtgtcaact 380

                                                                       
Query: 181 cttaacacactcgagcttcttggggcctggttcccatcttctcctgatgcctgttccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaacacactcgagcttcttggggcctggttcccatcttctcctgatgcctgttccaga 440

                                                                       
Query: 241 atctgctctttgttaagttgtgtcctgttgtgtagataaagatgtaaatatctgtgacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgctctttgttaagttgtgtcctgttgtgtagataaagatgtaaatatctgtgacta 500

                                                                       
Query: 301 acatttgggctgctctccgtttggggccaacgtgacattcttgatcgtgtccatacgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatttgggctgctctccgtttggggccaacgtgacattcttgatcgtgtccatacgtgt 560

                                                                       
Query: 361 ctgacttatgtagctgccacaccgtcctctgacgtctgtcggtgttccgtttcagagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgacttatgtagctgccacaccgtcctctgacgtctgtcggtgttccgtttcagagcag 620

                                                                       
Query: 421 atcatccccccaccccccacccccagcccagtgcttggcctagaacaggcttccagggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcatccccccaccccccacccccagcccagtgcttggcctagaacaggcttccagggcc 680

                                                   
Query: 481 ctttttgtctcagcctggctcctcttttcgagccccgccc 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttttgtctcagcctggctcctcttttcgagccccgccc 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no236_o23.g1 MSMg01no236_o23.g1 CHROMAT_FILE:
MSMg01no236_o23.g1 PHD_FILE: MSMg01no236_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:37 2005
         (242 letters)



>mm_chr4_137582574_137583215
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagattagtctgagtaaaagcaaaggtgatgggtagatttctgtctcggacccatagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagattagtctgagtaaaagcaaaggtgatgggtagatttctgtctcggacccatagaac 379

                                                                       
Query: 61  agaacagaaaaccgtgtccaccctaaaggcaaagaagcctggagtgccccaagcttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agaacagaaaaccgtgtccaccctaaaggcaaagaagcctggagtgccccaagcttcctt 319

                                                                       
Query: 121 agccatcagggctgaagctgcaagaaacaaagcgacaggagcccaaggaggaagcagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agccatcagggctgaagctgcaagaaacaaagcgacaggagcccaaggaggaagcagtgg 259

                                                                     
Query: 181 cagccaggccaagaagcctcctgatccaccgagtcctcccttgggttgctctcgtttg 238
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagccaggccaagaagcctccagatccaccgagtcctcccttgggttgctctcgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)