BAC Information

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BAC

Clone NameMSMg01-237A06
Chromosome4 (Build37)
Map Location 21,319,336 - 21,319,641
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237A06.T7 (MSMg01no237_a06.b1)MSMg01-237A06.TJ (MSMg01no237_a06.g1)
ACCAG402097AG402098
length707717
length of high quality
(start - end)
608 (100 - 707)627 (58 - 684)
definitionCHROMAT_FILE: MSMg01no237_a06.b1 PHD_FILE: MSMg01no237_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:43 2005CHROMAT_FILE: MSMg01no237_a06.g1 PHD_FILE: MSMg01no237_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATCCGGAGAGGATCCGCGGAATTCTTTTCTCCCGACTGTGTCAT
TGAGTATTTTTTTTTGTCTCACTGAGTTTATCCAGAGCTGATTTTCCCCA
ACAGTAGGAAACAACTGAAGACACATAACTGTGTCTTTCTGAGAATCTGT
CAATAGCCAACAATTCTGCAGAGAGGTGCAGGGCTCCTCCATGAATCCTC
ACATGAGGCTGACTTGGTCCTGGACCAGCACATGTAACAACAGCTGCTGC
AGGATCATGGTTGGAGTGGCTATGTTGGCTCAGAAGGTAGCATTTCGTAC
CCCTTCCCTATCTTCTGCTTCTGTGCCTCTGTGACTCCTTGTCTGACATG
TTCATGGAACCTTAGACTGGTGATATAAATACTCTGTTTTGGGTTTTATT
CTCAGTACTTTCAACAGGTATGAGTTTCTGTATCTTTTACTGCTCATTGC
AGTGGGAAGTTTCTCCGATTAAGATGGAAAGTTACTTTCTATGGGCATAA
AATAACTTTTTAAAAGGAAGTTTGGTGGCAAGTCAATTTAGCAACAATAC
TAATTATGTTTTCCCCTAGGGCCTAAGTCATCCTATCCTTGGATATTTAA
CTGGGTTTTCCATACTAGGCATGAATTTCCTTCCAAGGAATAAGCTTAAA
ATACAATAGGAGTACAGTTGGCTACCCCTGTAACAGTTGTATAATTTTTG
CACAGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTATATGCATCTTTCTTTTTTCAAAGGGGAATAAGAGATAGTTT
GTTCCGGAGCCATTTTGAGTGACTATGCCCCCTGGAACTCAGATTTGGGC
TACCCCAAACTTCGTGTTTCAATGTGGAAGCACTTTAATGAAGTTTTTAA
TGTTTCCACAAAATAAAGAGTCCTAAATCAAGCTACATTTAAATTATATT
TATGTTTATCATCAGAGTAGATATGGCAAGGTGGAGTGGTGCTAAGATTC
TATTCTGATGCCATTCATAGCTTTTGACTTGCCATAAGCCAGTGATCTGC
TAAATTACCACATTCAGAAAAAGTTTTTGTCTATTAATCACAAATTGTTA
GTTCAGACACTGATATGGGCATGGAGTGGCTATTCTGGAGTGCTAGTACA
AGTACAAGTAAAACTAGTAACTAGTCTCTTATAACAGGGAGCTAATGCCT
GGAGAAAGAACACTACTGAAAACATGTAGAATAAGCACGTTTCAGAGACA
AGAAATGAGAATAGGATCAGCATACAAGGTGCGTTCTGCAGTGAAAACAT
ATTCCAGTCATGGGGTTTAAAGGCAGAGAATCTCCACAAGTGTGCAATGA
GAAAACTCAGGGTACACACATGGTGACGACTAGTAAAGTAGTGTCACTGA
CACCTGCAAAAGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_a06.b1 MSMg01no237_a06.b1 CHROMAT_FILE:
MSMg01no237_a06.b1 PHD_FILE: MSMg01no237_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:43 2005
         (608 letters)



>mm_chr4_21319336_21320343
          Length = 1008

 Score =  514 bits (266), Expect = e-150
 Identities = 296/306 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagtaggaaacaactgaagacacataactgtgtctttctgagaatctgtcaatagcca 60
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 306 aacagtaggaaacaactgaagatacataactgtgtctttccgagaatctgtcaatagcca 247

                                                                       
Query: 61  acaattctgcagagaggtgcagggctcctccatgaatcctcacatgaggctgacttggtc 120
           |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 acaattctgcagagaggtgtggggctcctccatgaatcctcacatgtggctgacttggtc 187

                                                                       
Query: 121 ctggaccagcacatgtaacaacagctgctgcaggatcatggttggagtggctatgttggc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctggaccagcacacgtaacaacagctgctgcaggatcatggttggagtggctatgttggc 127

                                                                       
Query: 181 tcagaaggtagcatttcgtaccccttccctatcttctgcttctgtgcctctgtgactcct 240
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 126 tcagaagatagcatttcgtaccccttccctagcttctgcttctgtgcctctgtgactcct 67

                                                                       
Query: 241 tgtctgacatgttcatggaaccttagactggtgatataaatactctgttttgggttttat 300
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 66  tgtctgacatgttcacggaaccgtagactggtgatataaatactctgttttgggttttat 7

                 
Query: 301 tctcag 306
           ||||||
Sbjct: 6   tctcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)