BAC Information

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BAC

Clone NameMSMg01-237I20
Chromosome4 (Build37)
Map Location 97,482,090 - 97,593,223
singlet/doubletdoublet
Overlap geneNfia
Upstream geneLOC620883, EG638698
Downstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237I20.T7 (MSMg01no237_i20.b1)MSMg01-237I20.TJ (MSMg01no237_i20.g1)
ACCAG402468AG402469
length762761
length of high quality
(start - end)
321 (45 - 365)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no237_i20.b1 PHD_FILE: MSMg01no237_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:24 2005CHROMAT_FILE: MSMg01no237_i20.g1 PHD_FILE: MSMg01no237_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,592,907 - 97,593,223)(97,482,090 - 97,482,263)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCCAATTTGTAAAAATAGGCTCTATTCTACTTCCACGAACATT
ACCCACCTGGCATTTTATATTCTCCAATTTAGAATTATCTCATGCTGCAA
GCAGTGTGAAAAAAAATCTTACTTGCTTACATACTCATGGATGGATATGT
ATGAAAAGAGAAAAATTGCATATTTTATGTGGGTTTTTTTGTCACTGTCA
CACAATACTATTCACCCAAATATGAACTAAAATATCAGCTAGTGTGTAAT
AAAAACAAAAAGAAAAATACTCTCATTTGAATCATCATTACTAACTTGTA
AGTTAAAAGTGTGCGATTTCTTGCCCCGCCCCCCGCCTGAACTTTCAATT
TTAAATTTGAAAACAAAGGCTTTATTCGGTGCATTCTAAAAGAAGTGATA
GTACAATGTGTAAGAATTATCACAAAAATTGTGTGTGTGTGATAGAGAGA
GAGACAGAGAAACAGAGAGACAGAAAAAGAGAGAGAAAGAGGCAGAGAGG
CAGGCAGAAGGGAGGGAGGGACAGAGAAAGAGAAAGAGAGAAATGTCAGG
GTACCGTTGCATATTTCTATGTGTGTTTATGTGGAGGCCCAAGGAGGGTG
TTGGGTACTTGCTCCCGGCTTTATTGCCTTGAGACAGGCTCTCTCACTAT
ACCAGAAGGTTGCCGCTTCAGTTAGGCCATTATNCACAGGGCTCCCAGGA
TCATTCCATCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTTCCATTTTTTATTA
GGTATTTAACTCATTTACATTTCCACTGCTATACCAAAAGTCCCCCATAT
CCACCCTCCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCCAAA
GAGGAATTCTTAATCTAACTTGTTTGGAAGCATGAATGTACTCGATAGTA
TCTTGGTAAGATGAAATGCTTACCACCTAGACCTCAGAAGTCAGAGGTGA
CATGGAACGAGTTTGGATTTTGCTTCCTTCCCACTGTCTTTCAGTTTTAA
AGTTATAGAATTTCATTTTCTTGAGCCCGCCCCATTGCAGTGGGTTAATA
TGAAGGTGGAAAGATATTCCAAAGGGAGACCAGCACCACCGCCCATCACA
GGAAAGACTCTAGGAAACAAATGGGTAGCCATAGGCTTGGAATCATAGAA
TGTCTTAGTTGTGAGGGACCTTAAATTCGATTTAATCCAAAATTTAGATC
CCACGACCTGGATGAGATATGTGTTTTGTAATTGTGAATGGACTTTACTC
ATGATGTACTTCTAGTTGTTTATGTTAATAATGAGAATAATCTGTATGAC
AGTCTCCCTTTCTTTGGATGTTTGTATGATGCTTGTTAATCCATTTTCGG
TAAAAACATGTAAGAGAAAATTGCAATCCCGCATTGAAATCTGAAAAATA
AAAGTAACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_i20.b1 MSMg01no237_i20.b1 CHROMAT_FILE:
MSMg01no237_i20.b1 PHD_FILE: MSMg01no237_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:24 2005
         (321 letters)



>mm_chr4_97592703_97593423
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgccaatttgtaaaaataggctctattctacttccacgaacattacccacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattctttgccaatttgtaaaaataggctctattctacttccacgaacattacccacct 462

                                                                       
Query: 65  ggcattttatattctccaatttagaattatctcatgctgcaagcagtgtgaaaaaaaatc 124
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggcattttatattctaaaatttagaattatctcatgctgcaagcagtgtgaaaaaaaatc 402

                                                                       
Query: 125 ttacttgcttacatactcatggatggatatgtatgaaaagagaaaaattgcatattttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttacttgcttacatactcatggatggatatgtatgaaaagagaaaaattgcatattttat 342

                                                                       
Query: 185 gtgggtttttttgtcactgtcacacaatactattcacccaaatatgaactaaaatatcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtgggtttttttgtcactgtcacacaatactattcacccaaatatgaactaaaatatcag 282

                                                                       
Query: 245 ctagtgtgtaataaaaacaaaaagaaaaatactctcatttgaatcatcattactaacttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctagtgtgtaataaaaacaaaaagaaaaatactctcatttgaatcatcattactaacttg 222

                            
Query: 305 taagttaaaagtgtgcg 321
           |||||||||||||||||
Sbjct: 221 taagttaaaagtgtgcg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no237_i20.g1 MSMg01no237_i20.g1 CHROMAT_FILE:
MSMg01no237_i20.g1 PHD_FILE: MSMg01no237_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:24 2005
         (295 letters)



>mm_chr4_97481770_97482464
          Length = 695

 Score =  298 bits (154), Expect = 3e-85
 Identities = 169/174 (97%)
 Strand = Plus / Plus

                                                                       
Query: 121 caaagaggaattcttaatctaacttgtttggaagcatgaatgtactcgatagtatcttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagaggaattcttaatctaacttgtttggaagcatgaatgtactcgatagtatcttgg 380

                                                                       
Query: 181 taagatgaaatgcttaccacctagacctcagaagtcagaggtgacatggaacgagtttgg 240
           ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 taagaagaaatgtttaccacctagacctcagaagtcagaggtgacatggaatgagtttgg 440

                                                                 
Query: 241 attttgcttccttcccactgtctttcagttttaaagttatagaatttcattttc 294
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttgcttccttcacactgtctttcagttttaaagttatagaatttcattttc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)