BAC Information

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BAC

Clone NameMSMg01-237J11
Chromosome4 (Build37)
Map Location 78,666,639 - 78,666,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237J11.T7 (MSMg01no237_j11.b1)MSMg01-237J11.TJ (MSMg01no237_j11.g1)
ACCAG402497AG402498
length724729
length of high quality
(start - end)
295 (368 - 662)478 (54 - 531)
definitionCHROMAT_FILE: MSMg01no237_j11.b1 PHD_FILE: MSMg01no237_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:27 2005CHROMAT_FILE: MSMg01no237_j11.g1 PHD_FILE: MSMg01no237_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTA
TTTGCCCTACATCAGACTGTTGTGGGAAAGGAAGCTTGTTTTCCAGTGAC
CATGATTATAGACTAAATAATGAGAATGAGACATTGAAATTTTCTGTCAC
AACACTCTTCTCCTCTTCCCCAACATCCTCCTCCTACCCCCCCCCCAAAA
AAAAAACCCATAAAGAAACAGTCCAGACAGGTAGCTATTGAAAAGAGGCC
TAAAAAGTTGTGATAAAAATGCTGAAATGCTGCTCTTCACAGTTGATGGC
TTGTGGTAATTGGGTGGAGAAAGACTCAGTTATATTTAAGGAGCTGGCCA
CTGATAGTCTGAACATGTTTTAATCAATAAAGTGTTGAAAAAAATCAATT
TAACTTAGTCATAAATAAACAACTTTGTAGCACTAAATGGCATATATAAT
ATATTTTCAATGATAAAACTAATAAATACTAGGAAATTACTGCTTTTCAT
GGATCATAGAAATATGGATTTGATAAAAAGTAGTAAATAATACATAATAA
TAATTGTATAAATAGTTTTTCTTAAAACTTAGAAACCTTTTAATGATTAA
AATCCTAAAAAAAATCAAGAAGTGATAGGATATTTAATATTAGCAAGGTT
CCCTCTTTCATTTCTGTTTTTTTTTAAGATTTATTTTATTAATATATGTA
AGTACACTGTAGCTGTCTTCAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCCA
GAAATTCACTTTGCTCCCAGAGCTTAGTCTTCAAAGCTCCTGCCAGGACG
GCCCACCAAGGCCCACTTACAGCATTCAAACACTTTTCTAGGCCAATATC
CCCAAATCTTACATATTGCTAATAGAATCAGTTTTATAAATTCTGTTACA
TCAGTGTGCCACTCACTGATACCAAATCTCTATTAGTTACTTCTCTATTG
TGTGGTAAAATATTTCTACTGGAGCAACTTATAACAGAAAGTGTTTAATC
TGGTTCACAGATTGAGACAGAGTTAATGACAGTAGAGCTAAAGAACAGCT
GAAGGAGGACATCTTCATCCATATCCATGATGCAGAGAAAGAGAAAGTTT
TAGAAATTCTAGGAGGTGTTTTGTTTTATTTTGTTTTTTGTTTGTTTGTT
TGTTTGTTTGTTTTTTTGAGATTTTTTGTTTTCTTTTAATTTTATTTTAT
TTCTAAATTATTTTTACACTCCATATTCCATTTCCCACCCCTCCCAGCCC
ATCCCTCAACTTCTTCTAGGTCCCACACTCTGTTTGCTACATGATTTGCT
TCCCCTCTCCACCCCCATCAGATTTCCAAAACTCCCTTGGTTTTTCTTTG
TCCCTTGAGCGTTTAAGCCGCATTTATTTCTTGTAATGACATTACACTTG
TCCGCTCCCCCTGTTGTTAAGTGTAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_j11.b1 MSMg01no237_j11.b1 CHROMAT_FILE:
MSMg01no237_j11.b1 PHD_FILE: MSMg01no237_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:27 2005
         (295 letters)



>mm_chr4_78666439_78667134
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%), Gaps = 1/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaatcaataaagtgttgaaaaaaatcaatttaacttagtcataaataaacaactttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaatcaataaagtgttgaaaaaaatcaatttaacttagtcataaataaacaactttg 260

                                                                       
Query: 61  tagcactaaatggcatatataatatattttcaatgataaaactaataaatactaggaaat 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcactaaatgacatatataatatattttcaatgataaaactaataaatactaggaaat 320

                                                                       
Query: 121 tactgcttttcatggatcatagaaatatggatttgataaaaagtagtaaataatacataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgcttttcatggatcatagaaatatggatttgataaaaagtagtaaataatacataa 380

                                                                       
Query: 181 taataattgtataaatagtttttcttaaaacttagaaaccttttaatgattaaaatccta 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 taataattgtataaatagtttttcttaaaacttagaaaacttttaatgattaaaatccta 440

                                                                   
Query: 241 aaaaaaa-tcaagaagtgataggatatttaatattagcaaggttccctctttcatt 295
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaaatcaagaagtgataggatatttaatattagcaaggttccctctttcatt 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space:   196482
Effective search space used:   196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)