Query= MSMg01no237_o14.b1 MSMg01no237_o14.b1 CHROMAT_FILE:
MSMg01no237_o14.b1 PHD_FILE: MSMg01no237_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:51 2005
(280 letters)
>mm_chr4_19578749_19579430
Length = 682
Score = 485 bits (251), Expect = e-142
Identities = 267/273 (97%), Gaps = 2/273 (0%)
Strand = Plus / Minus
Query: 9 tcactttgattatgcatcatgatgggctgtggtttggggataatgttttgtgtgggttgg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcactttgattatgcatcatgatgggctgtggtttggggataatgttttgtgtgggttgg 422
Query: 69 aaagctc--tttctcttttttctaatggaatataacagtttaaataatgcaagggtaatc 126
||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 aaagctcttttttttttttttctaatgaaatataacagtttaaataatgcaagggtaatc 362
Query: 127 tataaagcttaaaaatgactttttccaaaccctgtctactccttgtgtttgaggaaaata 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tataaagcttaaaaatgactttttccaaaccctgtctactccttgtgtttgaggaaaata 302
Query: 187 tttctttcattgcctttccatttcaactctgattgtttatttaaaatttcagtaatttgt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctttcattgcctttccatttcaactctgattgtttatttaaaatttcagtaatttgt 242
Query: 247 ttaattcagtctgactctgattcacttctatgt 279
|||||||||||||||||||||||| ||||||||
Sbjct: 241 ttaattcagtctgactctgattcaattctatgt 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 682
Length adjustment: 9
Effective length of query: 271
Effective length of database: 673
Effective search space: 182383
Effective search space used: 182383
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_o14.g1 MSMg01no237_o14.g1 CHROMAT_FILE:
MSMg01no237_o14.g1 PHD_FILE: MSMg01no237_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:51 2005
(680 letters)
>mm_chr4_19436558_19437637
Length = 1080
Score = 1135 bits (587), Expect = 0.0
Identities = 656/679 (96%)
Strand = Plus / Plus
Query: 1 tagtgttgtttaaaaacttaggataaagtgataagattaggaaagcatcccatatacatc 60
|||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 201 tagtgttgcttaaagccttaggataaagtgataagattaggaatgcatattatatacatc 260
Query: 61 agtttgacagatcctcacagttattgggactacatgtacagcagtttataaaaccttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttgacagatcctcacagttattgggactacatgtacagcagtttataaaaccttcaa 320
Query: 121 gttagttaagtccacttgaggaagctctcctgagacttcacttagcacggagacaattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagttaagtccacttgaggaagctctcctgagacttcacttagcacggagacaattac 380
Query: 181 caaagttacatgctgggaagaggccaaaactgctagactggtattgaaagtaatcatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 caaagttacatgctgggaagaggccaaaactgctagactggtattgaaagtgatcatata 440
Query: 241 cacaaaatctccttctaatgaatgccattaggatggaatgttgaattctatgtaagatgg 300
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cactaaatctccttctaatgaatgccattaggatggaatgttgaattccatgtaagatgg 500
Query: 301 ctgtttccaagtcccagaagaaggctatcgtaatagcacattgcgaggaggattttaacc 360
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 501 ctgtttccaagtcccagaagaaggctatcataatagcacattgtgaggaggattttaacc 560
Query: 361 aattacatttactcaaaactgtacagcctggatgtatctgacatgctttgtggaaatcag 420
||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 561 aattacatttactcaaaactgtacaacatggatgcatctgtcatgctttgtggaaatcag 620
Query: 421 aaattgatttttaaagggtagtgtctgatagagttgtcatttaagtttttacaaaggctg 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 aaattgatttttaaagggtagtgtctgatagagttgtcctttaagtttttacaaaggctg 680
Query: 481 gttgatagttttcagaattggaaggaatatgaacacattttaaatagcagttaatatcat 540
||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 681 gttgatagttttcagaattggaaggaatatgaacaaaatttaaatagcagttactatcat 740
Query: 541 gaacaaaaggtcctgaaaagaagctgtgcctataatagctaaatgactggttagcaatcc 600
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 gaacaaaaggtcctggaaagaagctgtgcctataaaagctaaatgactggttagcaatcc 800
Query: 601 aataattgtgaagtggctggctctgcacatccagatcgcaattacaaactttctagctta 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aataattgtgaagtggttggctctgcacatccagatcgcaattacaaactttctagctta 860
Query: 661 ccctccttggtactcattc 679
|||||||||||||||||||
Sbjct: 861 ccctccttggtactcattc 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
