BAC Information

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BAC

Clone NameMSMg01-260C23
Chromosome4 (Build37)
Map Location 24,788,844 - 24,788,979
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664973, F730047E07Rik, Klhl32
Downstream gene1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260C23.T7 (MSMg01no260_c23.b1)MSMg01-260C23.TJ (MSMg01no260_c23.g1)
ACCAG402918AG402919
length8011,401
length of high quality
(start - end)
147 (79 - 225)---
definitionCHROMAT_FILE: MSMg01no260_c23.b1 PHD_FILE: MSMg01no260_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:12 2005CHROMAT_FILE: MSMg01no260_c23.g1 PHD_FILE: MSMg01no260_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAGATCCGC
GGAATTCCCTAATTCTCCCCAGAATAGACCTACAGTTGAGAAACTACTCC
AAATGGCAATCCTGAGCTGATGTGACTGAGTGTAGAGCTTCTGTCCTTGA
ATCACCAGTCCTCTGCTGTTTTTAAACTAATCATGCTCTTCCTGCCTCCA
TGCCACCCCCACCCCCACCTCAGTTTCCCTCAGGTTAATAGCTTTCTACT
TGAAATCTCTTAAACCATCATATTTAATATTCCCTGTCACACAGTGAACT
GTTGCTAGTGGACTTTCTGACAAATCTCTTCCTGGTGAACTGATGAACAT
CTCTTGTCTACTTCCTATTCTGATTCTTCTAACACATACATATTTTATAT
CTTTAATATAAATTTATCCCCCCCCTTTTTTTAATATTATTATTTTAAAA
TTTTAACATATGACCTCTCATTTTTATATCATACAATTACTATTATATTA
ATATTTTATCTTATTTTAATCTCTTCTATTACTTAATTCACTCATTTTTA
ATTCTACCATTTTTTTATTTTCTTATAACCTTTTTATCTTCTTTCCTTCA
TAATGTTTATACTTTTTCCTATTTCATATTATCCTTCTTACTTCATTACT
TATATATTATATAATTAAATTTAATAAATTAAACACCATGCAATAATCAT
CACACTTCATTTATGCATCTTTTATTCTTCTATTATCTACATCTTCTATT
ATTTTTTTTCTTTCTCTATCATTTTCTTTTCCTATCTTCTATTTCCTTTT
C
ATCGGGCGTGGTTCGGAGTCTGCCAACGATCGCGCGGATACCGCATAACC
ACTCACACATAAAACGCGGTATCGCGGTAATACCGCGCATGCTAACGACA
TTGCAGGGGCAGGTCGCTCGTGGTTTTCGGCGTTAGTTTAGATTGATTCG
CCGCAGTACACGCTCGAGACTGCCGCGCCTCCNCGGCGTTACAGTTACTT
TTATATTCTATACGGCTGAGCACGACCGACGGAACGAGGGATATAATTCG
TATAGTACGCACCGACATGTATGCTCCGTCGTCTTCTCGCACGGCTCTTG
GTGCGGCGTATTTACATAGCCGTCTAAAGCGATACTATCAGCCGCATNAG
GCAGCGCCAGTACCTACGATATTCTCAGTATAATCATGTGCTCGCGACTA
ATATGCCGCGCGCAGCTATATCATCTATAGATATCCGTGATTCCCGCCGC
TCCGTGCACGCAGAATCTCACATTACCCTATCGTAGTACTCCACATTACC
TCGCTCGCCATAGACGCGACACAAATACGCCGCCGTGTTGTGTCGCGAGC
GCCGCTCTGATCCCGCACGTATCGCGCGCGCGCTNATCCCGTAGTGTTAC
CGCCTATAGAGCATAACGTACGCCCCGCGTCACCTGTATTACTGCGCCTA
TCTCTATATACCCACCGGCGCCTCGCGTACCTATATCTCCGCGACGTAGT
TCCTCCGTGCTCCGCGCCTATCGCGTGTCTGTCGACGAATTCGATACCGC
TCCTCTACCGTTCCACGCCCCGTGCCTCCGCGTGTTTTCATGCTATCGCC
GACAACGCCGATCGAACGANACAGCAAGACGATTATACTATCGGCGGCGG
TCTAACGACTGTCCTTATACGTTCTAACCGCCGTTGCGACCTTACTTCTA
CACCCTAGATCTTACCCGTCGTATGGATTAGGCATATCCGCGCGCTGTCG
ATCGTCTAATTTGGAATATTCACCCGCGTATTGTCATACACGTAGCGCCA
CAGGTAGTTAGAACTAAGCGTCGTAAGAGTCTATCGACGGGGCTGCGTTT
ACGCCTTNCNCGCAGAACTCNAGTCCACCTCTTGTCGGAGCGTTACGTGC
GCGCGCGGTACCGTGTGTTCGATGTTTCATTCGTACGCGTAGAACCGCCG
CGTCGTGGGCGCCGTATCATAGTAGCGAGTGTACAGTTATTCGCACGACT
GGAGTTATACTCCCACTCTCACAGTTGCCGCACGTTCTAACATGATGATA
TATNAAGTAGTACGACGATCATCGAGTACGCGATAGCCCGTAATAGAGCG
ATGTAGTAGGACCGTCGCCNTCGTACTAAGTATGTCGATATCACCGCCTC
GCGAGCATCTCCGATCGTGTGATCGTGGCACCACAACGCATTATATATCT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_c23.b1 MSMg01no260_c23.b1 CHROMAT_FILE:
MSMg01no260_c23.b1 PHD_FILE: MSMg01no260_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:12 2005
         (147 letters)



>mm_chr4_24788633_24789179
          Length = 547

 Score =  224 bits (116), Expect = 1e-63
 Identities = 131/136 (96%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaaactactccaaatggcaatcctgagctgatgtgactgagtgtagagcttctgtccttg 71
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 212 gaaactactccaaatggcaatcctgagctgatgtgaccgagtatagagcttctgtccttg 271

                                                                       
Query: 72  aatcaccagtcctctgctgtttttaaactaatcatgctcttcctgcctccatgccacccc 131
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 272 aatcaccagtcctctgctgtttttaaactaatcatgctcttcccgcctccacgccacccc 331

                           
Query: 132 cacccccacctcagtt 147
           ||||||| ||||||||
Sbjct: 332 cacccccgcctcagtt 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)