BAC Information

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BAC

Clone NameMSMg01-260I08
Chromosome4 (Build37)
Map Location 22,371,785 - 22,372,128
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4
Downstream genePou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260I08.T7 (MSMg01no260_i08.b1)MSMg01-260I08.TJ (MSMg01no260_i08.g1)
ACCAG403164AG403165
length818734
length of high quality
(start - end)
30 (96 - 125)347 (77 - 423)
definitionCHROMAT_FILE: MSMg01no260_i08.b1 PHD_FILE: MSMg01no260_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:38 2005CHROMAT_FILE: MSMg01no260_i08.g1 PHD_FILE: MSMg01no260_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATAATTNCNNNCNCTAAACNACTCCTATATTCANNAAATCCGCGN
AATTCAAGGAATCCTACTCAAAGAANAAATCAATGGANAAAGGANGCAAT
GTTAACGCANACAACATCCTACCACCCTCCTAAANCAAGCGCTTNANGCA
NCCAGAANTGGAANNNANNNAGGATAACANAANCCTGCATTCANACACCA
CACTGCANTTGGCCTCTTAAACCAGCTTAACAACCCCTTCCCAAGGCCAA
ATTAAAGCTTCCTTTTGGGATTTTGACTGCTTTAACCCCAAAACAACCTT
CACTCTCTTAAANATACCTCTTGGCCTACCCTGCTTCTGGACCCAAACTT
TATTTTTTCTTCCAAACTTACCAGGTATTTTTTAACCATTCCAAGTTATT
TTGGGGGGGGGGGGGGGGGCGGGGGGGCGGGGGGGGGGGCTTCNNNNNNT
TNNCCCCNNCTCCTCTTGGACTATNNTATAATCCCTTTTATCCCTCTCCC
CTTCCCACCTCCACCACTCCCCCCCATTACGGGGGGGGGGNTTCTTTCCN
NCNCTNCTCANATAAANACCCCCTCCTTTAACCTTTTTCCTCTTCTCCCC
CCTTTCTTTCTCTATACATCCCCCCCTCCCCCCCCCTTTCTTCTTCTCTT
TCCCTTCCCCCCTATTCCTTCCCCCTACCCTCTTCTTCCTACCCCCCCTT
CTTTCCTCTCTCCTTCCCCCTTCCTTTATTCGAGTTGGGGGGGGGGATCC
TTTTTCTTTTTCCCCTCTTTTTCTCCCCCACCTCTTTCCTCTTTTTAGGG
GGTGGTGGGGGGTGGGGG
TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGCCATTGGATATATTTNGGAG
AAACAAAAAGAAAAATAATTCTGAAACATATTCAGTAATTATCTGAAGAA
AATGAAGACTAAAGAGATGCTTGGAAAAACTGTATGGAGAAGCAAATTCT
TTGTGCTGAAATCTAACATAAATATGTCAATTGTCAGGCCATTGTATGTT
TGTGGGCTTGTACGTTATTTTTTGAAAAGCCCCTATGTTTCCATTGTTTG
AAGTTTTTCATTGACTTTGAAAATTGCTATCCCTAGATAAATTGTGACAT
TTCCTTTCTACATGTTGGCCCAGTTTTACATTTTGGAATTGTCAGATAGA
TTCATTACTCCTATTTCTAAACCCACATGACCATAATTCAACTATGTATC
ATGTAGCAGGCTCTGAGCTACATAAAAACATTCTATCACTAATATACTTG
GAGGCACCTTGACATTTATATATGCACTTTTATAACGAAGATTTTGGTCT
TGGATTTCATCTTTTTTACCTTTGATAGCTTTCTACTCTGACATTAGGCC
CTTGGTTCAGGCTTACAGAGGCCTATTTACCAGTAGGTCTCATTATAAAC
AGTGAGTATAAACCTAATATGTTCACTATGTGCTAAACAGACGTGCCTCT
TTCATAATTGTGGCATGCCTCTCTTATGCTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_i08.g1 MSMg01no260_i08.g1 CHROMAT_FILE:
MSMg01no260_i08.g1 PHD_FILE: MSMg01no260_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:38 2005
         (347 letters)



>mm_chr4_22371585_22372329
          Length = 745

 Score =  632 bits (327), Expect = 0.0
 Identities = 342/347 (98%), Gaps = 4/347 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgccattggatatatttnggagaaacaaaaagaaaaataattctgaaacatattcagt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgccattggatatattt-ggagaaacaaaaagaaaaataattctgaaacatattcagt 259

                                                                       
Query: 61  aattatctgaagaaaatgaagactaaagagatgcttggaaaaactgtatggagaagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aattatctgaagaaaatgaagactaaagagatgcttggaaaaactgtatggagaagcaaa 319

                                                                       
Query: 121 ttctttgtgctgaaatctaacataaatatgtcaattgtcaggccattgtatgtttgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttctttgtgctgaaatctaacataaatatgtcaattgtcaggccattgtatgtttgtggg 379

                                                                       
Query: 181 cttgtacgttattttttgaaaagcccc-tatgtttccattgtttgaagtttttcattgac 239
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 cttgtacgttattttt-gaaaagccccctatgtttccattgtttgaagtttttcattgac 438

                                                                       
Query: 240 tttgaaaattgctatccctagataaattgtgacatttcctttctacatgttggcccagtt 299
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 tttgaaaattg-tatccctagataaattgtgacatttcctttctacatgttggcccaatt 497

                                                          
Query: 300 ttacattttggaattgtcagatagattcattactcctatttctaaac 346
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttacattttggaattgtcagatagattcattactcctatttctaaac 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 745
Length adjustment: 9
Effective length of query: 338
Effective length of database: 736
Effective search space:   248768
Effective search space used:   248768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)