BAC Information

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BAC

Clone NameMSMg01-260P09
Chromosome4 (Build37)
Map Location 69,894,426 - 70,071,430
singlet/doubletdoublet
Overlap geneCdk5rap2
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
Downstream geneMegf9, LOC100039565, LOC100039979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260P09.T7 (MSMg01no260_p09.b1)MSMg01-260P09.TJ (MSMg01no260_p09.g1)
ACCAG403482AG403483
length741802
length of high quality
(start - end)		692 (50 - 741)333 (76 - 408)
definitionCHROMAT_FILE: MSMg01no260_p09.b1 PHD_FILE: MSMg01no260_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:13 2005CHROMAT_FILE: MSMg01no260_p09.g1 PHD_FILE: MSMg01no260_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,894,426 - 69,895,113)(70,071,098 - 70,071,430)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATTCACTATCATGGAAAGTTTTATATGGCTCCAAAAGTCA
AACCTATACAACAGGGTTCATTAGAAAACTTATCTTCTACCCCTGACCCT
CCAAGCTTGCCCTTATAGTTATATGAGTCTCCTGCTTTCAGGATCTGTCT
ACACATTGGTAACCCTTCATATGTATTTCTTATATAAACCGATGCCCTTT
CCCCAGAACAGTGTTAGGAGCGGAAAGGGGAGGTGAATTAAATATAAATG
GCAAATAAAGAACACAGAGAAGAGAGAGGCTATAAACTGCTGTAAACCTG
AAAGTCTGCTTCACAAACACCAAGTAAAAGGTGCCACATGAAAAACAGGC
AGAGGAAGAAATGTGCCCATCACCAACGACCTACAAATACACCAGCAAGC
ACATTGGTGCATTTCTGAGGTCCACACTCTGCTTTGAAATTCTATGGCAC
TGACATGAACATATTCAATTAACCTGAGACACCTTCAGGAAGAAGGGTGA
ATTGTCCTAAAGAATGACAGTCCCTAGACTGATCTGCAAGTGGAGGAGGA
TCAACAGCTTACAAACTTAGTGTATATATGTGTTGTGTGCCTGTATGTGT
GTATGTGTGCATACATGTATTAGACACAAACTGGTTCTGTCTACTATTGA
CAGCTGCTTCTATCCGCTAAGGGCAAAACACTGCACTGAGG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGCGCCGCTTGACTGAGAACAAGAG
CTGGGTTGGAGGGGGCGGGACCTGGGGAACCGAGCGCGCCGCGACTGCCG
GGGAACCAGTGGCGCTGCCGCCGCCGACACCGGCGCCACCACTCTGCGTT
CACGATGGACTCGGGGATGGAAGAGGAAGGCGCCCTGCCTGGGACCCTCA
GCGGTTGCAGGTGTGGCCCTGGCTTTGGGATTCGTGGTAACTGGGTTGGG
GTTCCCGTTGATGGCGACTCACTCCCTGGAGGCCTTCGGTTTGCTTGGGG
ATGGTCTCGGCTGCGCCCCGAGTGTGGTGGGACCTGGGTGTCCAGCCAGC
ACTACATTGCACCGCGTGTTGTGTGTTCTGGAGTACTTTGAGGACGATGT
GTACGCTAGGCAGGCGGGCTTTTTGACTTAGTGTGAGGAGATGTCTACTC
CCTATTATCTTTTCCTTCCTTTTCCCTTTCTCCTTCCTCTTTTTTTTCTG
CACTTTCCCCGTTTACTTCCTCCCTCTTCTTCTCCTTACTTATTCTATAT
ATCCTCCTAATATTTACTAACTATTTCTTTCTCCTATCTATTTACTATCT
ATTGCCCTATTCCCTTACTTCCCCTTTTCTCTCCTCGCTTCCATCATTTA
CCTCTTTCTTCTCCCCTTCTCCCAATACCCTCTCCCCTCTTTTTCTTTCT
TCTCCCATTTCTTTTCCCTCTCCATTTCTTCGTCTTTTCTTTTCTCTTCA
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_p09.b1 MSMg01no260_p09.b1 CHROMAT_FILE:
MSMg01no260_p09.b1 PHD_FILE: MSMg01no260_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:13 2005
         (692 letters)



>mm_chr4_69894222_69895313
          Length = 1092

 Score = 1176 bits (608), Expect = 0.0
 Identities = 668/688 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattcactatcatggaaagttttatatggctccaaaagtcaaacctatacaaca 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattcacaattatggaaagttttatatggctccaaaagtcaaacctatacaaca 264

                                                                       
Query: 65  gggttcattagaaaacttatcttctacccctgaccctccaagcttgcccttatagttata 124
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 265 gggttcattagaaaacttatcttctacccctgaccctccaagctcgccctcatagttata 324

                                                                       
Query: 125 tgagtctcctgctttcaggatctgtctacacattggtaacccttcatatgtatttcttat 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 tgagtctcctgctttcaggatctgtctacacattggtaacccttcacatgtatttcttat 384

                                                                       
Query: 185 ataaaccgatgccctttccccagaacagtgttaggagcggaaaggggaggtgaattaaat 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 ataaaccgatgccctttccccagaacagtgttaggagtggaaaggggaggtgaattaaat 444

                                                                       
Query: 245 ataaatggcaaataaagaacacagagaagagagaggctataaactgctgtaaacctgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataaatggcaaataaagaacacagagaagagagaggctataaactgctgtaaacctgaaa 504

                                                                       
Query: 305 gtctgcttcacaaacaccaagtaaaaggtgccacatgaaaaacaggcagaggaagaaatg 364
           |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 505 gtctgcttcacaaacaccaagtaaaaggtgccacataaaaaacagacagagaaagaaatg 564

                                                                       
Query: 365 tgcccatcaccaacgacctacaaatacaccagcaagcacattggtgcatttctgaggtcc 424
           ||||||  | ||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct: 565 tgcccagaagcaacgacctacgactacaccagcaaccacattggtgcatttctgaggtcc 624

                                                                       
Query: 425 acactctgctttgaaattctatggcactgacatgaacatattcaattaacctgagacacc 484
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 acactctgctttgaaattctatggcactgacatgaacatagtcaattaacctgagacacc 684

                                                                       
Query: 485 ttcaggaagaagggtgaattgtcctaaagaatgacagtccctagactgatctgcaagtgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcaggaagaagggtgaattgtcctaaagaatgacagtccctagactgatctgcaagtgg 744

                                                                       
Query: 545 aggaggatcaacagcttacaaacttagtgtatatatgtgttgtgtgcctgtatgtgtgta 604
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 745 aggaggatcaacagcttacaaacttagtgtatatacatgttgtgtgcctgtatgtgtgta 804

                                                                       
Query: 605 tgtgtgcatacatgtattagacacaaactggttctgtctactattgacagctgcttctat 664
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgtgcatacatgtattagacacaagctggttctgtctactattgacagctgcttctat 864

                                       
Query: 665 ccgctaagggcaaaacactgcactgagg 692
           | ||||||||||||||||||||||||||
Sbjct: 865 ctgctaagggcaaaacactgcactgagg 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_p09.g1 MSMg01no260_p09.g1 CHROMAT_FILE:
MSMg01no260_p09.g1 PHD_FILE: MSMg01no260_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:14 2005
         (333 letters)



>mm_chr4_70070898_70071630
          Length = 733

 Score =  636 bits (329), Expect = 0.0
 Identities = 332/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcgccgcttgactgagaacaagagctgggttggagggggcgggacctggggaaccgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggcgccgcttgactgagaacaagagctgggttggagggggcgggacctggggaaccgagc 474

                                                                       
Query: 61  gcgccgcgactgccggggaaccagtggcgctgccgccgccgacaccggcgccaccactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gcgccgcgactgccggggaaccagtggcgctgccgccgccgacaccggcgccaccactct 414

                                                                       
Query: 121 gcgttcacgatggactcggggatggaagaggaaggcgccctgcctgggaccctcagcggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcgttcacgatggactcggggatggaagaggaaggcgccctgcctgggaccctcagcggt 354

                                                                       
Query: 181 tgcaggtgtggccctggctttgggattcgtggtaactgggttggggttcccgttgatggc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 353 tgcaggtgtggccctggctttgggattcgtggtacctgggttggggttcccgttgatggc 294

                                                                       
Query: 241 gactcactccctggaggccttcggtttgcttggggatggtctcggctgcgccccgagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gactcactccctggaggccttcggtttgcttggggatggtctcggctgcgccccgagtgt 234

                                            
Query: 301 ggtgggacctgggtgtccagccagcactacatt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ggtgggacctgggtgtccagccagcactacatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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