XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGTTACTCTAAAATATATTGTCTACAAAATATTTGCTGCCTGCTGCTTA
GCCCAGGGTAGCAGGAGAACATCACAGGATCAATGGATGATCATATGCTA
CTGAAAAGAATTGGGATTCTACGTGTTTCCAGAATATCTAGTCTGAAACA
ATAGAGCCTGAAGATTGTCGTTGATAGGAGACCCTCTGACATGTGGCCCA
AGTGTGAATAAGGCACTGTTGTTTATTCTGCTTGTTTGCAATGCATTGTG
TGCTGTGCAATCTGTCAGGCATCTGCTCTGTGCAGGCTTCCTTGGAATGA
TATGGAAAGATTATTTGAGACTACCCCGACACAGTGGCTATGTAAATGTC
ACATAGGTCCCTTGTACATTTCCTGAGGGCTCCTTGATGGGGCACATTTC
AAAGCGATAAAGGTTACAGCACCCTGTGACGGATTTATGTTACACAGTCC
GCTGGCCATGATTTAGTTTTGTAGCAGACATTCCATTTTAAATTTAGAAA
TTAATCATTTAGCAGACCTGGTTTTATTGGGTACTGTAGAACATACAAAA
AAGAGTAAGGGATGAAATTTCTGCACATCAATGATTTTATTAAATGAAAA
GCATACATTTTATGTAGTTTTCTGATGTAATTCTAGTAGAGATTAAATAC
ACATTAGTTGAAAACTGCTTTTATTTTAGAATACTTTAAAATGAATAAAT
TTTTGACCAAATCA

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCCATGCACTGGAGTTCTTTGTTAC
TTTTCTTTAATAAATCTATGTTTCGTGTGATCAAAACATAAACAAACAAA
AAATAAAACAAAAACTAATTTTCCTTTTTCCTTTGACTAAGACAGCTTTA
AATTTAGTCTCATCAAAATTATAGAGCATAGCTCTGCTTACAGGTCTCAC
AAAACTTCTAAAAATATGTTTGTCTTATATTCCCAGGAAAGTTTTTTTTT
AATTACTAAAGAAATTTAGAAAGAGAAAGCATTGTTCTTCTTCAGAACAG
ATTGTGAATGTATTTTTACCAGAAGCCTGCATCTCCTAATGTAAACATTC
CAATGGGAACATATTGAAATGATGAAGGTCAGTCCTGTATGTGGGCAGAT
GTTGTTTAATAACAGGCTTTAGTCATTTGTATGTTCAGAGACTGGGTATA
GTTTCTGTGTCACTAAAAGCCTTGCTTTTTCTGGCTTGGACATGTTCTCA
TGCTTTCATGCTTGCTTGTGTAGTGTGACCATGATGACCCCAATGAGAGC
CAACACCAATAACTGATCCACTCTGTACCAGGCATTGTTCATTTTTCAGT
TTACAGTCCTTTCTGGAATTTCCACAACTTTCTTAAAGTGGATAAAAATC
ATTCTTCCCAGATTTCCCTGAAAAAACTGAAACTAAA

Query= MSMg01no261_m05.b1 MSMg01no261_m05.b1 CHROMAT_FILE:
MSMg01no261_m05.b1 PHD_FILE: MSMg01no261_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:13 2005
         (378 letters)



>mm_chr4_93085095_93085872
          Length = 778

 Score =  723 bits (374), Expect = 0.0
 Identities = 377/378 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggctatgtaaatgtcacataggtcccttgtacatttcctgagggctccttgatgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggctatgtaaatgtcacataggtcccttgtacatttcctgagggctccttgatgggg 260

                                                                       
Query: 61  cacatttcaaagcgataaaggttacagcaccctgtgacggatttatgttacacagtccgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatttcaaagcgataaaggttacagcaccctgtgacggatttatgttacacagtccgc 320

                                                                       
Query: 121 tggccatgatttagttttgtagcagacattccattttaaatttagaaattaatcatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccatgatttagttttgtagcagacattccattttaaatttagaaattaatcatttag 380

                                                                       
Query: 181 cagacctggttttattgggtactgtagaacatacaaaaaagagtaagggatgaaatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacctggttttattgggtactgtagaacatacaaaaaagagtaagggatgaaatttct 440

                                                                       
Query: 241 gcacatcaatgattttattaaatgaaaagcatacattttatgtagttttctgatgtaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gcacatcaatgattttattaaatgaaaagcatacattttatgtagttatctgatgtaatt 500

                                                                       
Query: 301 ctagtagagattaaatacacattagttgaaaactgcttttattttagaatactttaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagtagagattaaatacacattagttgaaaactgcttttattttagaatactttaaaat 560

                             
Query: 361 gaataaatttttgaccaa 378
           ||||||||||||||||||
Sbjct: 561 gaataaatttttgaccaa 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_m05.g1 MSMg01no261_m05.g1 CHROMAT_FILE:
MSMg01no261_m05.g1 PHD_FILE: MSMg01no261_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:13 2005
         (560 letters)



>mm_chr4_93271246_93272205
          Length = 960

 Score = 1013 bits (524), Expect = 0.0
 Identities = 551/560 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccatgcactggagttctttgttacttttctttaataaatctatgtttcgtgtgatca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 760 ctcccatgcactggagttctttgttacttttctttaataaatctatgtttggtgtgatca 701

                                                                       
Query: 61  aaacataaacaaacaaaaaataaaacaaaaactaattttcctttttcctttgactaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aaacataaacaaacaaaaaataaaacaaaaactaattttcctttttcctttgactaagac 641

                                                                       
Query: 121 agctttaaatttagtctcatcaaaattatagagcatagctctgcttacaggtctcacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agctttaaatttagtctcatcaaaattatagagcatagctctgcttacaggtctcacaaa 581

                                                                       
Query: 181 acttctaaaaatatgtttgtcttatattcccaggaaagtttttttttaattactaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acttctaaaaatatgtttgtcttatattcccaggaaagtttttttttaattactaaagaa 521

                                                                       
Query: 241 atttagaaagagaaagcattgttcttcttcagaacagattgtgaatgtatttttaccaga 300
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 520 atttagaaagagaaaacattgttcttcttcagaaaagattgtgaatgtatttttaccaga 461

                                                                       
Query: 301 agcctgcatctcctaatgtaaacattccaatgggaacatattgaaatgatgaaggtcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcctgcatctcctaatgtaaacattccaatgggaacatattgaaatgatgaaggtcagt 401

                                                                       
Query: 361 cctgtatgtgggcagatgttgtttaataacaggctttagtcatttgtatgttcagagact 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctgtatgtgggcagatcttgtttaataacaggctttagtcatttgtatgttcagagact 341

                                                                       
Query: 421 gggtatagtttctgtgtcactaaaagccttgctttttctggcttggacatgttctcatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gggtatagtttctgtgtcactaaaagccttgctttttctggcttggacatgttctcatgc 281

                                                                       
Query: 481 tttcatgcttgcttgtgtagtgtgaccatgatgaccccaatgagagccaacaccaataac 540
           |  ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 280 tgccatgcctgcttgtgtagtgtgaccatgatgaccccaatgagagctaacaccaatgac 221

                               
Query: 541 tgatccactctgtaccaggc 560
           ||||||||||||||||||||
Sbjct: 220 tgatccactctgtaccaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)