Query= MSMg01no262_e15.b1 MSMg01no262_e15.b1 CHROMAT_FILE:
MSMg01no262_e15.b1 PHD_FILE: MSMg01no262_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:54 2005
(632 letters)
>mm_chr4_13502982_13504014
Length = 1033
Score = 1151 bits (595), Expect = 0.0
Identities = 621/631 (98%), Gaps = 5/631 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgaccccctct--attcctac-cacacaccttgcccctctcttctatatctt 61
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 696 gaattcactga--ccctcttcattcctacacacacaccttgcccctctcttctatatctt 639
Query: 62 gtcttagatatagattgatctcccaggccttccaagccatactagttatgagtgatttct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtcttagatatagattgatctcccaggccttccaagccatactagttatgagtgatttct 579
Query: 122 cacttccgcaaatcctattaccactcatttcctgtgctacctcagatggcgagatatggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cacttccgcaaatcctattaccactcatttcctgtgctacctcagatggcgagatatggt 519
Query: 182 cacatagatgactgcagatatggtcacttgattgtcactcttatctcttttgttcttgat 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cacatagatgactgcagacatggtcacttgattgtcactcttatctcttttgttcttgat 459
Query: 242 tcattctttcagccactgtggtggctaagatcattttggaatacactaagcaaactgctt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tcattctttcagccactgtggtggctaagatcattttggaatacactaagcaaactgctt 399
Query: 302 aattggagaaagtaattgtagtctttgacctctctgcccaggccactgattcttgagata 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aattggagaaagtaattgtactctttgacctctctgcccaggccactgattcttgagata 339
Query: 362 tgcctttgacccacccctgtattccttttatatctcttccaaattttatccctaatcatt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgcctttgacccacccctgtattccttttatatctcttccaaattttatccctaatcatt 279
Query: 422 ttaaatatgctaaatttccttcaatatatttcttttcatgtcatttggtctctacactct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttaaatatgctaaatttccttcaatatatttcttttcatgtcatttggtctctacactct 219
Query: 482 cagcatttatattctgtgatggttaatttctattgtcaactgattggattaagaaataac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cagcatttatattctgtgatggttaatttctattgtcaactgattggattaagaaataac 159
Query: 542 tatggagagtgttaacgaggcacacttttggttatatcttctccaaacagaattaactga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tatggagagtgttaacgaggcacacttttggttatatcttctccaaacagaattaactga 99
Query: 602 ggactaagacctgccctgaatatgatggtac 632
||||||||| ||||| |||||||||| ||||
Sbjct: 98 ggactaagatctgccttgaatatgatagtac 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_e15.g1 MSMg01no262_e15.g1 CHROMAT_FILE:
MSMg01no262_e15.g1 PHD_FILE: MSMg01no262_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:54 2005
(612 letters)
>mm_chr4_13338437_13339449
Length = 1013
Score = 1131 bits (585), Expect = 0.0
Identities = 606/613 (98%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 1 aacccttagggtgagaacaggagggaaagtagcctcccttggctattattacagtagctt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacccttagggcgagaacaggagggaaagtagcctcccttggctattattacagtagctt 260
Query: 61 tccacgtggaaattagctgctgtgggctgcagaggcactgcgtggtggaatgctgggtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacgtggaaattagctgctgtgggctgcagaggcactgcgtggtggaatgctgggtca 320
Query: 121 gtctcactgtgcagtgcttagtaatgggttcttccagaattcaacacctatttttaccag 180
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcactgtgcagtgcttagtgatggattcttccagaattcaacacctatttttaccag 380
Query: 181 gaaaaaaaaaa-tctcacacgccaaatttccctttctaattcctaagtttcttcttttcc 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaaaaaaaatctcacacgccaaatttccctttctaattcctaagtttcttcttttcc 440
Query: 240 catgaggcagtttaagaccacatcacctttggaatgtcactttgatttgaaattgccaat 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 catgaggcagtttaagaccacatcacctatggaatgtcactttgatttgaaattgccaat 500
Query: 300 tttttcaaaaaaaaaaaatcaaggtgaggttactgccaattcatagaaataaaatggatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttcaaaaaaaaaaaatcaaggtgaggttactgccaattcatagaaataaaatggatt 560
Query: 360 taattatcacgactcaggcattagatatggctaagagctaaacagttgccaaatagtggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattatcacgactcaggcattagatatggctaagagctaaacagttgccaaatagtggg 620
Query: 420 gtaaattgaatttctttcgaaccaggaaaaattgcagaactatgcatatcttagaagtcc 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 gtaaattgaatttctttcgaaccaggaaaaattgcagaactatgcaaatcttagaagtcc 680
Query: 480 acaccagcccatgagtggtttttcaaagagcagggaagaagagccttatagaacagagcc 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaccagcccatgagtggattttcaaagagcagggaagaagagccttatagaacagagcc 740
Query: 540 acaggggagctattcatgtctctattgcctgttggactaggcagaagatgtcacttaatc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggggagctattcatgtctctattgcctgttggactaggcagaagatgtcacttaatc 800
Query: 600 tccctaaactggg 612
|||||||||||||
Sbjct: 801 tccctaaactggg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
