Query= MSMg01no262_p19.b1 MSMg01no262_p19.b1 CHROMAT_FILE:
MSMg01no262_p19.b1 PHD_FILE: MSMg01no262_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:46 2005
(607 letters)
>mm_chr4_43758908_43759914
Length = 1007
Score = 961 bits (497), Expect = 0.0
Identities = 569/609 (93%), Gaps = 28/609 (4%)
Strand = Plus / Plus
Query: 1 actgcagacttgggatttttctgcctcagcctcctgagggctgagattgtaccgtcttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 225 actgcagacttgggatttttctgcctcagcctcctgagggctgagattgta-agtcttgt 283
Query: 61 tttgttaca--ggggaaaaaaaaaactaaaaacaaaaaacaaaaaacaaaaaacaaaaaa 118
||||||| | |||| ||||||||||||||||||||||
Sbjct: 284 tttgttagagggggg---aaaaaaactaaaaacaaaaaac-------------------- 320
Query: 119 caaaaaaaacccgctaaaagcactaaaacctcccagagtttgatatactcacatgaacct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 --aaaaaaacccgctaaaagcactaaaacctcccagagtttgatatactcacatgaacct 378
Query: 179 gttgtttggccacttgcagcacagttatctggtgtattctcccatgcacctcactcatag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gttgtttggccacttgcagcacagttatctggtgtattctcccatgcacctcactcatag 438
Query: 239 ttacaaagttaattcttgaaattctatcaacccacaaacattttgaatagctctaagaat 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttacaaagttaattcctgaaattctatcaacccacaaacattttgaatagctctaagaat 498
Query: 299 gatgttattattttaagtataactaaaacagtgttgtcacgtcttaaaacacttaattat 358
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 499 gatgttattattttaagtgtaactaaaacagtgttgtcacgtcttaaaacatttaattat 558
Query: 359 gagttcttagtacaatcaactctcaagcgagagtccaattttctacatcatttttcattc 418
||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 559 gagttcttagtacaatcaactctcaagcgagagcccaattttctacataagttttcattc 618
Query: 419 ttattttcctatattcataactgaccactataagcttgcaaagatctggttgtgccagag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttattttcctatattcataactgaccactataagcttgcaaagatctggttgtgccagag 678
Query: 479 tgacctggttcgaaaccaagagaggtgggatttgaactgaataggagaacttcctggata 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgacctggttcgaaaccaagagaggtgggatttgaactgaataggagaacttcctggata 738
Query: 539 tgaatgaatcttcgacacgctgtctacttgtgcagtttgcttatctgtggaagcaagagc 598
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 739 tgaatgaatcttcgacacgctgtctgctcatgcagtttgcttatctgtggaagcaagagc 798
Query: 599 cggggctgc 607
||||||||
Sbjct: 799 tggggctgc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_p19.g1 MSMg01no262_p19.g1 CHROMAT_FILE:
MSMg01no262_p19.g1 PHD_FILE: MSMg01no262_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:46 2005
(432 letters)
>mm_chr4_43911972_43912803
Length = 832
Score = 812 bits (420), Expect = 0.0
Identities = 429/432 (99%)
Strand = Plus / Minus
Query: 1 cactctagtgaattttcttgtgaagttctgccagggtgcttacattttgctttttcttta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cactctagtgacttttcttgtgaagttctgccagggtgcttacattttgctttttcttta 573
Query: 61 acccttcacatccaacattttatactgactacaatgcgtccacttcctcagaaaatcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 acccttcacatccaacattttatactgactacaatgcgtccacttcctcagaaaatcagg 513
Query: 121 aggatggagaatatggtgctcaggcggcttccactgtgctctcaacacatgtgcagagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aggatggagaatatggtgctcaggcggcttccactgtgctctcaacacatgtgcagagaa 453
Query: 181 ggcagtgaccctcccccatccagaagactgatatcaggtaaacagcgaggtactcctcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggcagtgaccctcccccatccagaagactgatatcaggtaaacagcgaggtactcctcac 393
Query: 241 agggaaggatatacttctgtgcaaaacagacctgctgccaaatggtcatcttccacacgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agggaaggatatacttctgtgcaaaacagacctgctgccaaatggtcatcttccacacgc 333
Query: 301 caccagtctcggtgcagagagcctgctccagagtcaagggagctcgccccctgtttcact 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 332 caccagtctcggtgcagagagcctgctccagagtcaagggagctcgccccttgtttcact 273
Query: 361 tcctcctattctgtcacctagcctcatgcaatttataacaaacgagctgataaggatggg 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 272 tcctcctattctgtcacctagcctcacgcaatttataacaaacgagctgataaggatggg 213
Query: 421 ggaggcagggtt 432
||||||||||||
Sbjct: 212 ggaggcagggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
