BAC Information

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BAC

Clone NameMSMg01-263A19
Chromosome4 (Build37)
Map Location 39,402,331 - 39,402,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665520, LOC100039487, 1700009N14Rik
Downstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263A19.T7 (MSMg01no263_a19.b1)MSMg01-263A19.TJ (MSMg01no263_a19.g1)
ACCAG404978AG404979
length733791
length of high quality
(start - end)
291 (75 - 365)372 (75 - 446)
definitionCHROMAT_FILE: MSMg01no263_a19.b1 PHD_FILE: MSMg01no263_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:51 2005CHROMAT_FILE: MSMg01no263_a19.g1 PHD_FILE: MSMg01no263_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAATACGCGGAA
TTCCGTAAGGGTCTATCATGAACATTTGTTCAGTGGGCTATCCAGAATAA
ACATCCTAAAGTGAGCCAGTGTGTTCAAATGACTGCTATAATCACAGTGT
GTTAAATGCAAACGTATGCTAGGCTGTAGCTCTTCGCACCAGACGAACAG
CAAAATGGAGTTTGTATTCCATATAATGGAAATTTACAGAATGTTGATGT
TAGAGATAGCTATAGAGAAAAGCAGATATGGACTTCAGATGACCAATTTT
CTTCCCATTCTTGCCAGTCTGAAGTGTCTGCTGCAAATTTCACTTTTCTC
ATGAAAGAAATTTGCTCTATTTCCTTGACCACGACACTTTTTTTCATTAT
TATGGTCCCTTTCTCCTTTATGCCCCCCCCCAAATTTAAAAATAGATAAC
TTTATCTGAGATAGTACTCACCTCCCCACTGACATCTGCTGTTCTAAGAA
CGAGGACTCTCCATAGAGGAGATTAGTCTCTTATTCACAACTGAAATCCA
TGGAGAGACAGATCCATTGCCTGGGTTGCTAATGCGTATCTTCTTTCCTT
CAGTTAATCCAGACATGTCTGGCTCCCTCCTGAATGCTTTTAAATGCGTC
TTATCTGCTTTATATATTTAATGTCTCCCTGATTTTTGTTAATTTTTTTT
CTACCTTCCTCTTCTCATTTTTGTACTCTTTTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATACATACACACAATATATGTATATA
TATATATGTATATATATATATACATATATGCTTATTATACTTTGATTACA
TCTTCTTCTTTCTTCACTTTTCTCTAATCTTCCAAACTTTAATAGCCACC
ATTTTACTCTGAATGGTTATGAGATTTTCTTTTTTAAAGTTCACATGTGG
AACCAAGCATTACATGTCTTTCTGTGATTGGCTGATTTAATTTAATATAA
TAATCTTTGTATCCATTTATGTTGTTACAAATAACAAGATTTAATTTTAA
GGCTGAGTGGTAGGCTATGGTGTATATGTATCATATTTTCTTTACTGGTT
GATACATTCTGTGGCGCCCCGGATATGCTTGGTGCATAGGGAGTGGTACT
ATTAGGATGCCGTGTCCCCTTGCCAGCTTCCCCCCTCTCTCTTTTACCCT
TATCTCTTCCTTTTCTCTCTTCTTCCTTTCCTCCTTTCACTCCTTTATTC
CTTCTCCATTATCTTTCCCCCTTTATTCCTTTCTTTCTCTTCCCCGCTAC
CTTCATCTCTTTTTTCTTTCTTTTCTCTTACTCCCACCTCTCCTATAACC
TCTTTTATTTACCCTCATTTGCACCATGTTTATTTCCTCATCTCTTTTAA
CCTTTCTCTAGAGTCCCTTATCCTCTTCCCTTATCTATAATTGCTTTTTT
TTTTTTCGTTCGAGTTCTGCTTTATTGTATATTTCCCCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_a19.b1 MSMg01no263_a19.b1 CHROMAT_FILE:
MSMg01no263_a19.b1 PHD_FILE: MSMg01no263_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:51 2005
         (291 letters)



>mm_chr4_39402131_39402821
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttcagtgggctatccagaataaacatcctaaagtgagccagtgtgttcaaatgact 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 201 tttgttcagtgggctatccagaataaacatcctaaagtgagccactgtgtttaaatgact 260

                                                                       
Query: 61  gctataatcacagtgtgttaaatgcaaacgtatgctaggctgtagctcttcgcaccagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctataatcacagtgtgttaaatgcaaacgtatgctaggctgtagctcttcgcaccagac 320

                                                                       
Query: 121 gaacagcaaaatggagtttgtattccatataatggaaatttacagaatgttgatgttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagcaaaatggagtttgtattccatataatggaaatttacagaatgttgatgttaga 380

                                                                       
Query: 181 gatagctatagagaaaagcagatatggacttcagatgaccaattttcttcccattcttgc 240
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagctatagagaaaagcagatgtagacttcagatgaccaattttcttcccattcttgc 440

                                                              
Query: 241 cagtctgaagtgtctgctgcaaatttcacttttctcatgaaagaaatttgc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtctgaagtgtctgctgcaaatttcacttttctcatgaaagaaatttgc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)