BAC Information

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BAC

Clone NameMSMg01-263C24
Chromosome4 (Build37)
Map Location 68,271,262 - 68,271,661
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433715, Tcp1-ps1
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263C24.T7 (MSMg01no263_c24.b1)MSMg01-263C24.TJ (MSMg01no263_c24.g1)
ACCAG405079AG405080
length748749
length of high quality
(start - end)
684 (45 - 728)526 (78 - 603)
definitionCHROMAT_FILE: MSMg01no263_c24.b1 PHD_FILE: MSMg01no263_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:02 2005CHROMAT_FILE: MSMg01no263_c24.g1 PHD_FILE: MSMg01no263_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTATTTATCTCTGTACACCATTTTTTAATAAGGTTATTTGATTCT
CTGGAGTCTAACTTTTTGAGTTCTTTGTATATATTGGATATTATTCCTCT
ATCATTTGTATGATTGGTAAAGATGTTTTCCCAGTCTGCTGATTGGAATT
TTGTGCTATTGACAGTGTCCTTTGCCTTAGAGAAGCTTTTTAATTTTATG
AGGTTCCATTTGTTGATTCTTGATCTCAGAGCATAAACCATTGGTGTTCT
GTACAGAAAAGTTTACCCTGGGCCTAAGTCCTTAAGGCTCTTCCTCACTT
TCTCCTCTATTATTATGTGGAGGTCCTTGATCCACTTATACTTGACCTTT
GTACAAGGAGATAAGAATGGATAGATTTGCATGTTGACCACCAGTTAAAA
TGGCATCATTAGTTGAAAGTGCTGTCTTTTTTCCAATGCATGGTTTTAGC
TTCTTTGTCAAAGATCAAGTAACCATATGTTTGTTGGTAAATTTCTGGGT
CTTCAATTCTATTCCATTGATCTACCTGCCTGTCTCTGTACCAATACCAT
GCAGTTTTTATCACCATTGCTCTGTAATAATGCTTGAGGTCAGGAATGGT
GATGCCCCCAGAATTTCTTTTATTTGTGAGAATATTTTTCACTAGCCTGG
TATTTTTTATATTCCACAACATTTTGAAAATTATTATTTCTTTTTTTC
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTATGACTTCCAGGAAGGTCT
TGTTTTATTTTGTTTTCACATTTCTTGGAGTTTTGTGTTTATATCATCTG
TAAATAGTGCATTTACTTTTTCTGTTTTCTGTCCTCTATTTTTTAAGTTT
TAATCTCCTTGTCCTATTGTACAAGGCAGTGCTTCTACTTTTATTCAAAA
AAGTGACTTAAAAGCTTTTTGCCAACTTGTTGGTTAAGAGTCAAAATACC
TTTGATGTGTTATTAATTTTATAGTCAAAATATTATCTTTTAGATGGAAT
AAAAATATTAGGAATACTATTCTATAATTAATTTTTATCAAACTGAATAA
GATATCCACTGTTCTAATTTTCTGAGAATATTTTTCTTATGAATTTTAAT
TTCATGAAAGTTTTCCATGTCAGTTGATGAAATTATACTGACATGGAAAA
TATGTTTCCTTATTTTTTCTGAATAATGAAATACTACTCAAGGCCTAAAC
TTTTTTGTTGTTGTTGTTTTGTTTTTGGTTTTTCAAGACATGGTTTCTCT
GAGTAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACAAGGCTGGCCTCA
ATGTCAGAAATCTACCTGCCTCTGCCTCCCAAGAGCTGTGATTAAAGGAT
TGTGCCACCACTGCTCATTTAAGTCTAAACATTTTGAATCAATGCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_c24.g1 MSMg01no263_c24.g1 CHROMAT_FILE:
MSMg01no263_c24.g1 PHD_FILE: MSMg01no263_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:02 2005
         (526 letters)



>mm_chr4_68271262_68272187
          Length = 926

 Score =  750 bits (388), Expect = 0.0
 Identities = 397/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttatgacttccaggaaggtcttgttttattttgttttcacatttcttggagttttgtg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acttatgacttccaggaaggttttgttttattttgttttcacatttcttggagttttgtg 341

                                                                       
Query: 61  tttatatcatctgtaaatagtgcatttactttttctgttttctgtcctctattttttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 340 tttatatcatctgtaaatagtgcatttactttttctgttttctgtcctctattttttaaa 281

                                                                       
Query: 121 ttttaatctccttgtcctattgtacaaggcagtgcttctacttttattcaaaaaagtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttttaatctccttgtcctattgtacaaggcagtgcttctacttttattcaaaaaagtgac 221

                                                                       
Query: 181 ttaaaagctttttgccaacttgttggttaagagtcaaaatacctttgatgtgttattaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttaaaagctttttgccaacttgttggttaagagtcaaaatacctttgatgtgttattaat 161

                                                                       
Query: 241 tttatagtcaaaatattatcttttagatggaataaaaatattaggaatactattctataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tttatagtcaaaatattatcttttagatggaataaaaatattaggaatactattctataa 101

                                                                       
Query: 301 ttaatttttatcaaactgaataagatatccactgttctaattttctgagaatatttttct 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ttaatttttatgaaactgaataagatatccactgttctaattttctgagaatatttttct 41

                                                   
Query: 361 tatgaattttaatttcatgaaagttttccatgtcagttga 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  tatgaattttaatttcatgaaagttttccatgtcagttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)