BAC Information

Click to search

BAC

Clone NameMSMg01-263D09
Chromosome4 (Build37)
Map Location 74,258,627 - 74,258,912
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258
Downstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D09.T7 (MSMg01no263_d09.b1)MSMg01-263D09.TJ (MSMg01no263_d09.g1)
ACCAG405097AG405098
length738752
length of high quality
(start - end)
317 (51 - 367)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no263_d09.b1 PHD_FILE: MSMg01no263_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:04 2005CHROMAT_FILE: MSMg01no263_d09.g1 PHD_FILE: MSMg01no263_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGCCTAGTCACTGCCCATCTTGCAGAGTAGTAATGGGGT
GATGGGCAAGCAACGAATCAGGAGCTGTCATGCCACATCAGGTGCTGAAA
CGTCACTCTGCGGGCTATATAAGTAGTGCCATTTTCCCGGTTCGGGGTCT
TCCCTCCTGATAAGTAAGCAATAAGAGCTTTGCCACAGAAGATTCCAGTT
GTCCTGAGCGTGTTCTTGCCGGCGGGGACAAAAGCTTAGGATAAGGAGGG
GCACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTATCAATTC
TGAATATCTATGCTCCATATATTAGGCCACCCACACTCATTAAAGAAACT
TTAGTAAAGCTCAAAGCACACACCGCACCTCACACAATAATAGTGGGAGA
CTTCAACACAAAACTTTCACCAATGGACAGATCATGGAAACAGAAACTAA
ACAGGGACATAGTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACA
GATATTTACAGAACATTTTATCCTAAAACAAAAGGATATACTATCTTCTC
AGCACCTCAGAGTACCTTCTCCAAAATTGGCCACATAATTGGTCACAAAA
CAAGCCTCAACATTATACAAAAATATTGAAATTGTCCCATGCATCCTATC
AGATCACCATGGCATAAGGCTGACCTTCAATTATAAAN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTACCCCATTCACTTGATGTCTTA
TTTAAGCTTTGCATATTCGGGCTTATATCACATTTCAGGTGCTGGGAAAT
GGATGCAATTAAAGAACTTGACACTACACAGATGTGAACAAGTATTCCTT
TCTCCTTTCCAATGCTTTTAGGTTTGTTAGTGTTCACTAGTTTGAGTTAG
GGCCTAATGAATTCAGGGCTTCAATGTAAGGGAATAGTATTAGTTGTTTA
GAAAGTAGGATAGGGTCATTCACTCTCTGGCATTAAAAGTGTCCTGGCAA
TATTTCCTTCTTATCTGCTTGGCCCACCCCTAGGTATTCTGAACTCTGAG
GTTGCCCTTATATAACTGCTGTTTCCTGACTAGTCTGCTCAGGCCGGAGA
CACTGTTTATGGTGGCAAGAGACCCTGCAGTGTCACGGCCTTTGTACTAT
GTACAAATGCAACTGAGGTCACTTGTTATGCTTGGAGACAGAAATGGTCT
GATAAAGTGCCCTGGGTCATGGGGTATGCAGCTGTCTGCTTAGAACTTGA
CAGAAAGCAGCTGAGTAAGGATGACTAGCTACTTAATGGATGTTAATTAC
TGCTCATGGCCTCCCTGTAGGTCAGAGGACAGAAGGACTCTGATGTCAGG
TCTGACATGCTGTGGCTGGCAACAATCTTGCACATTACTTTCGATTATAG
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d09.g1 MSMg01no263_d09.g1 CHROMAT_FILE:
MSMg01no263_d09.g1 PHD_FILE: MSMg01no263_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:04 2005
         (287 letters)



>mm_chr4_74258427_74259113
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaccccattcacttgatgtcttatttaagctttgcatattcgggcttatatcacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaccccattcacttgatgtcttatttaagctttgcatattcgggcttatatcacatt 260

                                                                       
Query: 61  tcaggtgctgggaaatggatgcaattaaagaacttgacactacacagatgtgaacaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggtgctgggaaatggatgcaattaaagaacttgacactacacagatgtgaacaagta 320

                                                                       
Query: 121 ttcctttctcctttccaatgcttttaggtttgttagtgttcactagtttgagttagggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctttctcctttccaatgcttttaggtttgttagtgttcactagtttgagttagggcc 380

                                                                       
Query: 181 taatgaattcagggcttcaatgtaagggaatagtattagttgtttagaaagtaggatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgaattcagggcttcaatgtaagggaatagtattagttgtttagaaagtaggatagg 440

                                                         
Query: 241 gtcattcactctctggcattaaaagtgtcctggcaatatttccttc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcattcactctctggcattaaaagtgtcctggcaatatttccttc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)